Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SAPCD1 (suppressor APC domain containing 1)

Identity

Alias_namesC6orf26
chromosome 6 open reading frame 26
Alias_symbol (synonym)NG23
Other alias
HGNC (Hugo) SAPCD1
LocusID (NCBI) 401251
Atlas_Id 72978
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31762996 and ends at 31764847 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAPCD1   13938
Cards
Entrez_Gene (NCBI)SAPCD1  401251  suppressor APC domain containing 1
AliasesC6orf26; NG23
GeneCards (Weizmann)SAPCD1
Ensembl hg19 (Hinxton)ENSG00000228727 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228727 [Gene_View]  chr6:31762996-31764847 [Contig_View]  SAPCD1 [Vega]
ICGC DataPortalENSG00000228727
TCGA cBioPortalSAPCD1
AceView (NCBI)SAPCD1
Genatlas (Paris)SAPCD1
WikiGenes401251
SOURCE (Princeton)SAPCD1
Genetics Home Reference (NIH)SAPCD1
Genomic and cartography
GoldenPath hg38 (UCSC)SAPCD1  -     chr6:31762996-31764847 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAPCD1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSAPCD1 - 6p21.33 [CytoView hg19]  SAPCD1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISAPCD1 [Mapview hg19]  SAPCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI765046 BC137541 BC137542 BU162048
RefSeq transcript (Entrez)NM_001039651
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167247 NT_167249
Consensus coding sequences : CCDS (NCBI)SAPCD1
Cluster EST : UnigeneHs.371225 [ NCBI ]
CGAP (NCI)Hs.371225
Alternative Splicing GalleryENSG00000228727
Gene ExpressionSAPCD1 [ NCBI-GEO ]   SAPCD1 [ EBI - ARRAY_EXPRESS ]   SAPCD1 [ SEEK ]   SAPCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAPCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401251
GTEX Portal (Tissue expression)SAPCD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SSQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SSQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SSQ6
Splice isoforms : SwissVarQ5SSQ6
PhosPhoSitePlusQ5SSQ6
Domains : Interpro (EBI)Suppressor_APCD_1/2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAPCD1
DMDM Disease mutations401251
Blocks (Seattle)SAPCD1
SuperfamilyQ5SSQ6
Human Protein AtlasENSG00000228727
Peptide AtlasQ5SSQ6
IPIIPI00019313   IPI00513990   
Protein Interaction databases
DIP (DOE-UCLA)Q5SSQ6
IntAct (EBI)Q5SSQ6
FunCoupENSG00000228727
BioGRIDSAPCD1
STRING (EMBL)SAPCD1
ZODIACSAPCD1
Ontologies - Pathways
QuickGOQ5SSQ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSAPCD1
Atlas of Cancer Signalling NetworkSAPCD1
Wikipedia pathwaysSAPCD1
Orthology - Evolution
OrthoDB401251
GeneTree (enSembl)ENSG00000228727
Phylogenetic Trees/Animal Genes : TreeFamSAPCD1
HOVERGENQ5SSQ6
HOGENOMQ5SSQ6
Homologs : HomoloGeneSAPCD1
Homology/Alignments : Family Browser (UCSC)SAPCD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAPCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAPCD1
dbVarSAPCD1
ClinVarSAPCD1
1000_GenomesSAPCD1 
Exome Variant ServerSAPCD1
ExAC (Exome Aggregation Consortium)SAPCD1 (select the gene name)
Genetic variants : HAPMAP401251
Genomic Variants (DGV)SAPCD1 [DGVbeta]
DECIPHERSAPCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAPCD1 
Mutations
ICGC Data PortalSAPCD1 
TCGA Data PortalSAPCD1 
Broad Tumor PortalSAPCD1
OASIS PortalSAPCD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSAPCD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAPCD1
DgiDB (Drug Gene Interaction Database)SAPCD1
DoCM (Curated mutations)SAPCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAPCD1 (select a term)
intoGenSAPCD1
Cancer3DSAPCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAPCD1
Genetic Testing Registry SAPCD1
NextProtQ5SSQ6 [Medical]
TSGene401251
GENETestsSAPCD1
Target ValidationSAPCD1
Huge Navigator SAPCD1 [HugePedia]
snp3D : Map Gene to Disease401251
BioCentury BCIQSAPCD1
ClinGenSAPCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401251
Chemical/Pharm GKB GenePA134974558
Clinical trialSAPCD1
Miscellaneous
canSAR (ICR)SAPCD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAPCD1
EVEXSAPCD1
GoPubMedSAPCD1
iHOPSAPCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:10 CEST 2017

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