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SAPCD2 (suppressor APC domain containing 2)

Identity

Alias_namesC9orf140
chromosome 9 open reading frame 140
Alias_symbol (synonym)p42.3
Other alias
HGNC (Hugo) SAPCD2
LocusID (NCBI) 89958
Atlas_Id 53738
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139956579 and ends at 139965028 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAPCD2   28055
Cards
Entrez_Gene (NCBI)SAPCD2  89958  suppressor APC domain containing 2
AliasesC9orf140; p42.3
GeneCards (Weizmann)SAPCD2
Ensembl hg19 (Hinxton)ENSG00000186193 [Gene_View]  chr9:139956579-139965028 [Contig_View]  SAPCD2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186193 [Gene_View]  chr9:139956579-139965028 [Contig_View]  SAPCD2 [Vega]
ICGC DataPortalENSG00000186193
TCGA cBioPortalSAPCD2
AceView (NCBI)SAPCD2
Genatlas (Paris)SAPCD2
WikiGenes89958
SOURCE (Princeton)SAPCD2
Genetics Home Reference (NIH)SAPCD2
Genomic and cartography
GoldenPath hg19 (UCSC)SAPCD2  -     chr9:139956579-139965028 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAPCD2  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblSAPCD2 - 9q34.3 [CytoView hg19]  SAPCD2 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISAPCD2 [Mapview hg19]  SAPCD2 [Mapview hg38]
OMIM612057   
Gene and transcription
Genbank (Entrez)BC009435 BC018901 BC024299 BC042162 BC048267
RefSeq transcript (Entrez)NM_178448
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)SAPCD2
Cluster EST : UnigeneHs.19322 [ NCBI ]
CGAP (NCI)Hs.19322
Alternative Splicing GalleryENSG00000186193
Gene ExpressionSAPCD2 [ NCBI-GEO ]   SAPCD2 [ EBI - ARRAY_EXPRESS ]   SAPCD2 [ SEEK ]   SAPCD2 [ MEM ]
Gene Expression Viewer (FireBrowse)SAPCD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89958
GTEX Portal (Tissue expression)SAPCD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UD0
Splice isoforms : SwissVarQ86UD0
PhosPhoSitePlusQ86UD0
Domains : Interpro (EBI)Suppressor_APCD_1/2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAPCD2
DMDM Disease mutations89958
Blocks (Seattle)SAPCD2
SuperfamilyQ86UD0
Human Protein AtlasENSG00000186193
Peptide AtlasQ86UD0
HPRD12943
IPIIPI00328702   IPI00816352   
Protein Interaction databases
DIP (DOE-UCLA)Q86UD0
IntAct (EBI)Q86UD0
FunCoupENSG00000186193
BioGRIDSAPCD2
STRING (EMBL)SAPCD2
ZODIACSAPCD2
Ontologies - Pathways
QuickGOQ86UD0
Ontology : AmiGOnucleus  nucleolus  cytoplasm  
Ontology : EGO-EBInucleus  nucleolus  cytoplasm  
NDEx NetworkSAPCD2
Atlas of Cancer Signalling NetworkSAPCD2
Wikipedia pathwaysSAPCD2
Orthology - Evolution
OrthoDB89958
GeneTree (enSembl)ENSG00000186193
Phylogenetic Trees/Animal Genes : TreeFamSAPCD2
HOVERGENQ86UD0
HOGENOMQ86UD0
Homologs : HomoloGeneSAPCD2
Homology/Alignments : Family Browser (UCSC)SAPCD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAPCD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAPCD2
dbVarSAPCD2
ClinVarSAPCD2
1000_GenomesSAPCD2 
Exome Variant ServerSAPCD2
ExAC (Exome Aggregation Consortium)SAPCD2 (select the gene name)
Genetic variants : HAPMAP89958
Genomic Variants (DGV)SAPCD2 [DGVbeta]
DECIPHER (Syndromes)9:139956579-139965028  ENSG00000186193
CONAN: Copy Number AnalysisSAPCD2 
Mutations
ICGC Data PortalSAPCD2 
TCGA Data PortalSAPCD2 
Broad Tumor PortalSAPCD2
OASIS PortalSAPCD2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSAPCD2
BioMutasearch SAPCD2
DgiDB (Drug Gene Interaction Database)SAPCD2
DoCM (Curated mutations)SAPCD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAPCD2 (select a term)
intoGenSAPCD2
Cancer3DSAPCD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612057   
Orphanet
MedgenSAPCD2
Genetic Testing Registry SAPCD2
NextProtQ86UD0 [Medical]
TSGene89958
GENETestsSAPCD2
Huge Navigator SAPCD2 [HugePedia]
snp3D : Map Gene to Disease89958
BioCentury BCIQSAPCD2
ClinGenSAPCD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89958
Chemical/Pharm GKB GenePA134959870
Clinical trialSAPCD2
Miscellaneous
canSAR (ICR)SAPCD2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAPCD2
EVEXSAPCD2
GoPubMedSAPCD2
iHOPSAPCD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:10 CET 2017

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