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SAR1A (secretion associated, Ras related GTPase 1A)

Identity

Alias_namesSARA1
SAR1a gene homolog (S. cerevisiae) 1
SAR1a gene homolog 1 (S. cerevisiae)
SAR1 homolog A (S. cerevisiae)
secretion associated, Ras related GTPase 1A
Alias_symbol (synonym)SAR1
Sara
Other aliasmasra2
HGNC (Hugo) SAR1A
LocusID (NCBI) 56681
Atlas_Id 72979
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 71909961 and ends at 71930285 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SAR1A (10q22.1) / NDC1 (1p32.3)SAR1A (10q22.1) / NPFFR1 (10q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAR1A   10534
Cards
Entrez_Gene (NCBI)SAR1A  56681  secretion associated, Ras related GTPase 1A
AliasesSAR1; SARA1; Sara; masra2
GeneCards (Weizmann)SAR1A
Ensembl hg19 (Hinxton)ENSG00000079332 [Gene_View]  chr10:71909961-71930285 [Contig_View]  SAR1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000079332 [Gene_View]  chr10:71909961-71930285 [Contig_View]  SAR1A [Vega]
ICGC DataPortalENSG00000079332
TCGA cBioPortalSAR1A
AceView (NCBI)SAR1A
Genatlas (Paris)SAR1A
WikiGenes56681
SOURCE (Princeton)SAR1A
Genetics Home Reference (NIH)SAR1A
Genomic and cartography
GoldenPath hg19 (UCSC)SAR1A  -     chr10:71909961-71930285 -  10q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SAR1A  -     10q22.1   [Description]    (hg38-Dec_2013)
EnsemblSAR1A - 10q22.1 [CytoView hg19]  SAR1A - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBISAR1A [Mapview hg19]  SAR1A [Mapview hg38]
OMIM607691   
Gene and transcription
Genbank (Entrez)AF086166 AF087897 AF217959 AF261717 AF274026
RefSeq transcript (Entrez)NM_001142648 NM_020150
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)SAR1A
Cluster EST : UnigeneHs.499960 [ NCBI ]
CGAP (NCI)Hs.499960
Alternative Splicing GalleryENSG00000079332
Gene ExpressionSAR1A [ NCBI-GEO ]   SAR1A [ EBI - ARRAY_EXPRESS ]   SAR1A [ SEEK ]   SAR1A [ MEM ]
Gene Expression Viewer (FireBrowse)SAR1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56681
GTEX Portal (Tissue expression)SAR1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR31
Splice isoforms : SwissVarQ9NR31
PhosPhoSitePlusQ9NR31
Domaine pattern : Prosite (Expaxy)SAR1 (PS51422)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF/SAR    Small_GTPase_SAR1   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Domain families : Smart (EMBL)SAR (SM00178)  
Conserved Domain (NCBI)SAR1A
DMDM Disease mutations56681
Blocks (Seattle)SAR1A
PDB (SRS)2GAO   
PDB (PDBSum)2GAO   
PDB (IMB)2GAO   
PDB (RSDB)2GAO   
Structural Biology KnowledgeBase2GAO   
SCOP (Structural Classification of Proteins)2GAO   
CATH (Classification of proteins structures)2GAO   
SuperfamilyQ9NR31
Human Protein AtlasENSG00000079332
Peptide AtlasQ9NR31
HPRD07608
IPIIPI00015954   IPI01009792   IPI00513941   IPI00644667   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR31
IntAct (EBI)Q9NR31
FunCoupENSG00000079332
BioGRIDSAR1A
STRING (EMBL)SAR1A
ZODIACSAR1A
Ontologies - Pathways
QuickGOQ9NR31
Ontology : AmiGOGTP binding  Golgi apparatus  intracellular protein transport  vesicle-mediated transport  sarcoplasmic reticulum  extracellular exosome  negative regulation of cargo loading into COPII-coated vesicle  
Ontology : EGO-EBIGTP binding  Golgi apparatus  intracellular protein transport  vesicle-mediated transport  sarcoplasmic reticulum  extracellular exosome  negative regulation of cargo loading into COPII-coated vesicle  
Pathways : KEGGProtein processing in endoplasmic reticulum    Legionellosis   
NDEx NetworkSAR1A
Atlas of Cancer Signalling NetworkSAR1A
Wikipedia pathwaysSAR1A
Orthology - Evolution
OrthoDB56681
GeneTree (enSembl)ENSG00000079332
Phylogenetic Trees/Animal Genes : TreeFamSAR1A
HOVERGENQ9NR31
HOGENOMQ9NR31
Homologs : HomoloGeneSAR1A
Homology/Alignments : Family Browser (UCSC)SAR1A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAR1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAR1A
dbVarSAR1A
ClinVarSAR1A
1000_GenomesSAR1A 
Exome Variant ServerSAR1A
ExAC (Exome Aggregation Consortium)SAR1A (select the gene name)
Genetic variants : HAPMAP56681
Genomic Variants (DGV)SAR1A [DGVbeta]
DECIPHER (Syndromes)10:71909961-71930285  ENSG00000079332
CONAN: Copy Number AnalysisSAR1A 
Mutations
ICGC Data PortalSAR1A 
TCGA Data PortalSAR1A 
Broad Tumor PortalSAR1A
OASIS PortalSAR1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSAR1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSAR1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAR1A
DgiDB (Drug Gene Interaction Database)SAR1A
DoCM (Curated mutations)SAR1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAR1A (select a term)
intoGenSAR1A
Cancer3DSAR1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607691   
Orphanet
MedgenSAR1A
Genetic Testing Registry SAR1A
NextProtQ9NR31 [Medical]
TSGene56681
GENETestsSAR1A
Huge Navigator SAR1A [HugePedia]
snp3D : Map Gene to Disease56681
BioCentury BCIQSAR1A
ClinGenSAR1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56681
Chemical/Pharm GKB GenePA34942
Clinical trialSAR1A
Miscellaneous
canSAR (ICR)SAR1A (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAR1A
EVEXSAR1A
GoPubMedSAR1A
iHOPSAR1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:18 CET 2017

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