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SARDH (sarcosine dehydrogenase)

Identity

Alias_namesDMGDHL1
Alias_symbol (synonym)SDH
Other aliasBPR-2
SAR
SARD
HGNC (Hugo) SARDH
LocusID (NCBI) 1757
Atlas_Id 53785
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133663562 and ends at 133738357 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RASAL2 (1q25.2) / SARDH (9q34.2)SARDH (9q34.2) / SARDH (9q34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SARDH   10536
Cards
Entrez_Gene (NCBI)SARDH  1757  sarcosine dehydrogenase
AliasesBPR-2; DMGDHL1; SAR; SARD; 
SDH
GeneCards (Weizmann)SARDH
Ensembl hg19 (Hinxton)ENSG00000123453 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123453 [Gene_View]  chr9:133663562-133738357 [Contig_View]  SARDH [Vega]
ICGC DataPortalENSG00000123453
TCGA cBioPortalSARDH
AceView (NCBI)SARDH
Genatlas (Paris)SARDH
WikiGenes1757
SOURCE (Princeton)SARDH
Genetics Home Reference (NIH)SARDH
Genomic and cartography
GoldenPath hg38 (UCSC)SARDH  -     chr9:133663562-133738357 -  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SARDH  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblSARDH - 9q34.2 [CytoView hg19]  SARDH - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBISARDH [Mapview hg19]  SARDH [Mapview hg38]
OMIM268900   604455   
Gene and transcription
Genbank (Entrez)AF047004 AF047190 AF095735 AF095736 AF095737
RefSeq transcript (Entrez)NM_001134707 NM_007101
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SARDH
Cluster EST : UnigeneHs.198003 [ NCBI ]
CGAP (NCI)Hs.198003
Alternative Splicing GalleryENSG00000123453
Gene ExpressionSARDH [ NCBI-GEO ]   SARDH [ EBI - ARRAY_EXPRESS ]   SARDH [ SEEK ]   SARDH [ MEM ]
Gene Expression Viewer (FireBrowse)SARDH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1757
GTEX Portal (Tissue expression)SARDH
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL12
Splice isoforms : SwissVarQ9UL12
Catalytic activity : Enzyme1.5.8.3 [ Enzyme-Expasy ]   1.5.8.31.5.8.3 [ IntEnz-EBI ]   1.5.8.3 [ BRENDA ]   1.5.8.3 [ KEGG ]   
PhosPhoSitePlusQ9UL12
Domains : Interpro (EBI)FAD-dep_OxRdtase    FAD/NAD-binding_dom    FAO_M    GCV_T_C    GCV_T_N    GcvT/YgfZ_C    TrmE/GcvT_dom1   
Domain families : Pfam (Sanger)DAO (PF01266)    FAO_M (PF16350)    GCV_T (PF01571)    GCV_T_C (PF08669)   
Domain families : Pfam (NCBI)pfam01266    pfam16350    pfam01571    pfam08669   
Conserved Domain (NCBI)SARDH
DMDM Disease mutations1757
Blocks (Seattle)SARDH
SuperfamilyQ9UL12
Human Protein AtlasENSG00000123453
Peptide AtlasQ9UL12
HPRD06831
IPIIPI00034308   IPI01011174   IPI01012557   IPI00003579   IPI00807391   IPI00843980   IPI00514525   IPI00642619   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL12
IntAct (EBI)Q9UL12
FunCoupENSG00000123453
BioGRIDSARDH
STRING (EMBL)SARDH
ZODIACSARDH
Ontologies - Pathways
QuickGOQ9UL12
Ontology : AmiGOmitochondrion  mitochondrial matrix  mitochondrial matrix  sarcosine dehydrogenase activity  sarcosine dehydrogenase activity  choline catabolic process  oxidation-reduction process  sarcosine catabolic process  
Ontology : EGO-EBImitochondrion  mitochondrial matrix  mitochondrial matrix  sarcosine dehydrogenase activity  sarcosine dehydrogenase activity  choline catabolic process  oxidation-reduction process  sarcosine catabolic process  
Pathways : KEGGGlycine, serine and threonine metabolism   
NDEx NetworkSARDH
Atlas of Cancer Signalling NetworkSARDH
Wikipedia pathwaysSARDH
Orthology - Evolution
OrthoDB1757
GeneTree (enSembl)ENSG00000123453
Phylogenetic Trees/Animal Genes : TreeFamSARDH
HOVERGENQ9UL12
HOGENOMQ9UL12
Homologs : HomoloGeneSARDH
Homology/Alignments : Family Browser (UCSC)SARDH
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSARDH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SARDH
dbVarSARDH
ClinVarSARDH
1000_GenomesSARDH 
Exome Variant ServerSARDH
ExAC (Exome Aggregation Consortium)SARDH (select the gene name)
Genetic variants : HAPMAP1757
Genomic Variants (DGV)SARDH [DGVbeta]
DECIPHERSARDH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSARDH 
Mutations
ICGC Data PortalSARDH 
TCGA Data PortalSARDH 
Broad Tumor PortalSARDH
OASIS PortalSARDH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSARDH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSARDH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SARDH
DgiDB (Drug Gene Interaction Database)SARDH
DoCM (Curated mutations)SARDH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SARDH (select a term)
intoGenSARDH
Cancer3DSARDH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM268900    604455   
Orphanet773   
MedgenSARDH
Genetic Testing Registry SARDH
NextProtQ9UL12 [Medical]
TSGene1757
GENETestsSARDH
Target ValidationSARDH
Huge Navigator SARDH [HugePedia]
snp3D : Map Gene to Disease1757
BioCentury BCIQSARDH
ClinGenSARDH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1757
Chemical/Pharm GKB GenePA34944
Clinical trialSARDH
Miscellaneous
canSAR (ICR)SARDH (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSARDH
EVEXSARDH
GoPubMedSARDH
iHOPSARDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:13:43 CEST 2017

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