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SARM1 (sterile alpha and TIR motif containing 1)

Identity

Alias_symbol (synonym)SARM
SAMD2
KIAA0524
Other aliasMyD88-5
HGNC (Hugo) SARM1
LocusID (NCBI) 23098
Atlas_Id 72981
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28371662 and ends at 28401038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
REXO2 (11q23.2) / SARM1 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SARM1   17074
Cards
Entrez_Gene (NCBI)SARM1  23098  sterile alpha and TIR motif containing 1
AliasesMyD88-5; SAMD2; SARM
GeneCards (Weizmann)SARM1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:28371662-28401038 [Contig_View]  SARM1 [Vega]
TCGA cBioPortalSARM1
AceView (NCBI)SARM1
Genatlas (Paris)SARM1
WikiGenes23098
SOURCE (Princeton)SARM1
Genetics Home Reference (NIH)SARM1
Genomic and cartography
GoldenPath hg38 (UCSC)SARM1  -     chr17:28371662-28401038 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SARM1  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblSARM1 - 17q11.2 [CytoView hg19]  SARM1 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBISARM1 [Mapview hg19]  SARM1 [Mapview hg38]
OMIM607732   
Gene and transcription
Genbank (Entrez)AB011096 AJ290445 AK026397 AK093615 AK302038
RefSeq transcript (Entrez)NM_015077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SARM1
Cluster EST : UnigeneHs.743510 [ NCBI ]
CGAP (NCI)Hs.743510
Gene ExpressionSARM1 [ NCBI-GEO ]   SARM1 [ EBI - ARRAY_EXPRESS ]   SARM1 [ SEEK ]   SARM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SARM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23098
GTEX Portal (Tissue expression)SARM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6SZW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6SZW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6SZW1
Splice isoforms : SwissVarQ6SZW1
PhosPhoSitePlusQ6SZW1
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    SAM    SAM/pointed    TIR_dom   
Domain families : Pfam (Sanger)SAM_2 (PF07647)    TIR_2 (PF13676)   
Domain families : Pfam (NCBI)pfam07647    pfam13676   
Domain families : Smart (EMBL)SAM (SM00454)  TIR (SM00255)  
Conserved Domain (NCBI)SARM1
DMDM Disease mutations23098
Blocks (Seattle)SARM1
SuperfamilyQ6SZW1
Peptide AtlasQ6SZW1
IPIIPI00908858   
Protein Interaction databases
DIP (DOE-UCLA)Q6SZW1
IntAct (EBI)Q6SZW1
BioGRIDSARM1
STRING (EMBL)SARM1
ZODIACSARM1
Ontologies - Pathways
QuickGOQ6SZW1
Ontology : AmiGOprotein binding  cytoplasm  mitochondrion  cytosol  microtubule  signal transduction  response to glucose  cell junction  axon  dendrite  dendrite  extrinsic component of mitochondrial outer membrane  negative regulation of MyD88-independent toll-like receptor signaling pathway  regulation of apoptotic process  innate immune response  synapse  regulation of dendrite morphogenesis  regulation of neuron death  regulation of neuron death  
Ontology : EGO-EBIprotein binding  cytoplasm  mitochondrion  cytosol  microtubule  signal transduction  response to glucose  cell junction  axon  dendrite  dendrite  extrinsic component of mitochondrial outer membrane  negative regulation of MyD88-independent toll-like receptor signaling pathway  regulation of apoptotic process  innate immune response  synapse  regulation of dendrite morphogenesis  regulation of neuron death  regulation of neuron death  
NDEx NetworkSARM1
Atlas of Cancer Signalling NetworkSARM1
Wikipedia pathwaysSARM1
Orthology - Evolution
OrthoDB23098
Phylogenetic Trees/Animal Genes : TreeFamSARM1
HOVERGENQ6SZW1
HOGENOMQ6SZW1
Homologs : HomoloGeneSARM1
Homology/Alignments : Family Browser (UCSC)SARM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSARM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SARM1
dbVarSARM1
ClinVarSARM1
1000_GenomesSARM1 
Exome Variant ServerSARM1
ExAC (Exome Aggregation Consortium)SARM1 (select the gene name)
Genetic variants : HAPMAP23098
Genomic Variants (DGV)SARM1 [DGVbeta]
DECIPHERSARM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSARM1 
Mutations
ICGC Data PortalSARM1 
TCGA Data PortalSARM1 
Broad Tumor PortalSARM1
OASIS PortalSARM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSARM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SARM1
DgiDB (Drug Gene Interaction Database)SARM1
DoCM (Curated mutations)SARM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SARM1 (select a term)
intoGenSARM1
Cancer3DSARM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607732   
Orphanet
MedgenSARM1
Genetic Testing Registry SARM1
NextProtQ6SZW1 [Medical]
TSGene23098
GENETestsSARM1
Target ValidationSARM1
Huge Navigator SARM1 [HugePedia]
snp3D : Map Gene to Disease23098
BioCentury BCIQSARM1
ClinGenSARM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23098
Chemical/Pharm GKB GenePA134971180
Clinical trialSARM1
Miscellaneous
canSAR (ICR)SARM1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSARM1
EVEXSARM1
GoPubMedSARM1
iHOPSARM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:11 CEST 2017

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