Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SART1 (squamous cell carcinoma antigen recognized by T-cells 1)

Identity

Alias_namessquamous cell carcinoma antigen recognised by T cells
squamous cell carcinoma antigen recognized by T cells 1
Alias_symbol (synonym)Ara1
Snu66
SNRNP110
Other aliasHOMS1
SART1259
HGNC (Hugo) SART1
LocusID (NCBI) 9092
Atlas_Id 42203
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65961689 and ends at 65980136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DPF2 (11q13.1) / SART1 (11q13.1)MTL5 (11q13.3) / SART1 (11q13.1)SART1 (11q13.1) / CNTN5 (11q22.1)
SART1 (11q13.1) / DRD4 (11p15.5)SART1 (11q13.1) / ITIH4 (3p21.1)SF3B2 (11q13.1) / SART1 (11q13.1)
MTL5 11q13.3 / SART1 11q13.1SART1 11q13.1 / CNTN5 11q22.1SF3B2 11q13.1 / SART1 11q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SART1   10538
Cards
Entrez_Gene (NCBI)SART1  9092  squamous cell carcinoma antigen recognized by T-cells 1
AliasesAra1; HOMS1; SART1259; SNRNP110; 
Snu66
GeneCards (Weizmann)SART1
Ensembl hg19 (Hinxton)ENSG00000175467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175467 [Gene_View]  chr11:65961689-65980136 [Contig_View]  SART1 [Vega]
ICGC DataPortalENSG00000175467
TCGA cBioPortalSART1
AceView (NCBI)SART1
Genatlas (Paris)SART1
WikiGenes9092
SOURCE (Princeton)SART1
Genetics Home Reference (NIH)SART1
Genomic and cartography
GoldenPath hg38 (UCSC)SART1  -     chr11:65961689-65980136 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SART1  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblSART1 - 11q13.1 [CytoView hg19]  SART1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISART1 [Mapview hg19]  SART1 [Mapview hg38]
OMIM605941   
Gene and transcription
Genbank (Entrez)AB006198 AF353625 AK223016 AK293200 AK297589
RefSeq transcript (Entrez)NM_005146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SART1
Cluster EST : UnigeneHs.502883 [ NCBI ]
CGAP (NCI)Hs.502883
Alternative Splicing GalleryENSG00000175467
Gene ExpressionSART1 [ NCBI-GEO ]   SART1 [ EBI - ARRAY_EXPRESS ]   SART1 [ SEEK ]   SART1 [ MEM ]
Gene Expression Viewer (FireBrowse)SART1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9092
GTEX Portal (Tissue expression)SART1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43290   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43290  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43290
Splice isoforms : SwissVarO43290
PhosPhoSitePlusO43290
Domains : Interpro (EBI)SNU66/SART1   
Domain families : Pfam (Sanger)SART-1 (PF03343)   
Domain families : Pfam (NCBI)pfam03343   
Conserved Domain (NCBI)SART1
DMDM Disease mutations9092
Blocks (Seattle)SART1
PDB (SRS)4PYU   
PDB (PDBSum)4PYU   
PDB (IMB)4PYU   
PDB (RSDB)4PYU   
Structural Biology KnowledgeBase4PYU   
SCOP (Structural Classification of Proteins)4PYU   
CATH (Classification of proteins structures)4PYU   
SuperfamilyO43290
Human Protein AtlasENSG00000175467
Peptide AtlasO43290
HPRD10440
IPIIPI00021417   IPI00910253   IPI01014010   IPI00984301   IPI00976126   
Protein Interaction databases
DIP (DOE-UCLA)O43290
IntAct (EBI)O43290
FunCoupENSG00000175467
BioGRIDSART1
STRING (EMBL)SART1
ZODIACSART1
Ontologies - Pathways
QuickGOO43290
Ontology : AmiGOspliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  maturation of 5S rRNA  RNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  Golgi apparatus  cytosol  cell cycle arrest  Cajal body  nuclear speck  mRNA cis splicing, via spliceosome  positive regulation of cytotoxic T cell differentiation  U4/U6 x U5 tri-snRNP complex  catalytic step 2 spliceosome  intrinsic apoptotic signaling pathway  
Ontology : EGO-EBIspliceosomal snRNP assembly  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  maturation of 5S rRNA  RNA binding  protein binding  nucleoplasm  nucleoplasm  cytoplasm  Golgi apparatus  cytosol  cell cycle arrest  Cajal body  nuclear speck  mRNA cis splicing, via spliceosome  positive regulation of cytotoxic T cell differentiation  U4/U6 x U5 tri-snRNP complex  catalytic step 2 spliceosome  intrinsic apoptotic signaling pathway  
Pathways : KEGGSpliceosome   
NDEx NetworkSART1
Atlas of Cancer Signalling NetworkSART1
Wikipedia pathwaysSART1
Orthology - Evolution
OrthoDB9092
GeneTree (enSembl)ENSG00000175467
Phylogenetic Trees/Animal Genes : TreeFamSART1
HOVERGENO43290
HOGENOMO43290
Homologs : HomoloGeneSART1
Homology/Alignments : Family Browser (UCSC)SART1
Gene fusions - Rearrangements
Fusion : MitelmanMTL5/SART1 [11q13.3/11q13.1]  [t(11;11)(q13;q13)]  
Fusion : MitelmanSART1/CNTN5 [11q13.1/11q22.1]  [t(11;11)(q13;q22)]  
Fusion : MitelmanSF3B2/SART1 [11q13.1/11q13.1]  [t(11;11)(q13;q13)]  
Fusion: TCGAMTL5 11q13.3 SART1 11q13.1 BRCA
Fusion: TCGASART1 11q13.1 CNTN5 11q22.1 HNSC
Fusion: TCGASF3B2 11q13.1 SART1 11q13.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSART1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SART1
dbVarSART1
ClinVarSART1
1000_GenomesSART1 
Exome Variant ServerSART1
ExAC (Exome Aggregation Consortium)SART1 (select the gene name)
Genetic variants : HAPMAP9092
Genomic Variants (DGV)SART1 [DGVbeta]
DECIPHERSART1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSART1 
Mutations
ICGC Data PortalSART1 
TCGA Data PortalSART1 
Broad Tumor PortalSART1
OASIS PortalSART1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSART1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSART1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SART1
DgiDB (Drug Gene Interaction Database)SART1
DoCM (Curated mutations)SART1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SART1 (select a term)
intoGenSART1
Cancer3DSART1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605941   
Orphanet
MedgenSART1
Genetic Testing Registry SART1
NextProtO43290 [Medical]
TSGene9092
GENETestsSART1
Target ValidationSART1
Huge Navigator SART1 [HugePedia]
snp3D : Map Gene to Disease9092
BioCentury BCIQSART1
ClinGenSART1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9092
Chemical/Pharm GKB GenePA34947
Clinical trialSART1
Miscellaneous
canSAR (ICR)SART1 (select the gene name)
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSART1
EVEXSART1
GoPubMedSART1
iHOPSART1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:54:24 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.