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SART3 (squamous cell carcinoma antigen recognized by T-cells 3)

Identity

Alias_symbol (synonym)KIAA0156
RP11-13G14
TIP110
p110
Other aliasDSAP1
P100
p110(nrb)
HGNC (Hugo) SART3
LocusID (NCBI) 9733
Atlas_Id 42205
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 108522214 and ends at 108561389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC12 (3p21.31) / SART3 (12q23.3)CDHR5 (11p15.5) / SART3 (12q23.3)REST (4q12) / SART3 (12q23.3)
SART3 (12q23.3) / CORO1C (12q24.11)SART3 (12q23.3) / GTF3A (13q12.2)SART3 (12q23.3) / PDGFRB (5q32)
SART3 (12q23.3) / SART3 (12q23.3)WDR74 (11q12.3) / SART3 (12q23.3)SART3 12q23.3 / CORO1C 12q24.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SART3   16860
Cards
Entrez_Gene (NCBI)SART3  9733  squamous cell carcinoma antigen recognized by T-cells 3
AliasesDSAP1; P100; RP11-13G14; TIP110; 
p110; p110(nrb)
GeneCards (Weizmann)SART3
Ensembl hg19 (Hinxton)ENSG00000075856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075856 [Gene_View]  chr12:108522214-108561389 [Contig_View]  SART3 [Vega]
ICGC DataPortalENSG00000075856
TCGA cBioPortalSART3
AceView (NCBI)SART3
Genatlas (Paris)SART3
WikiGenes9733
SOURCE (Princeton)SART3
Genetics Home Reference (NIH)SART3
Genomic and cartography
GoldenPath hg38 (UCSC)SART3  -     chr12:108522214-108561389 -  12q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SART3  -     12q23.3   [Description]    (hg19-Feb_2009)
EnsemblSART3 - 12q23.3 [CytoView hg19]  SART3 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBISART3 [Mapview hg19]  SART3 [Mapview hg38]
OMIM611684   
Gene and transcription
Genbank (Entrez)AB020880 AB073647 AF387506 AI656011 AK225174
RefSeq transcript (Entrez)NM_014706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SART3
Cluster EST : UnigeneHs.584842 [ NCBI ]
CGAP (NCI)Hs.584842
Alternative Splicing GalleryENSG00000075856
Gene ExpressionSART3 [ NCBI-GEO ]   SART3 [ EBI - ARRAY_EXPRESS ]   SART3 [ SEEK ]   SART3 [ MEM ]
Gene Expression Viewer (FireBrowse)SART3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9733
GTEX Portal (Tissue expression)SART3
Human Protein AtlasENSG00000075856-SART3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15020   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15020  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15020
Splice isoforms : SwissVarQ15020
PhosPhoSitePlusQ15020
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HAT    LSM_interact    Nucleotide-bd_a/b_plait    RRM_dom    SART3_RRM1    SART3_RRM2    TPR-like_helical_dom   
Domain families : Pfam (Sanger)Lsm_interact (PF05391)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam05391    pfam00076   
Domain families : Smart (EMBL)HAT (SM00386)  RRM (SM00360)  
Conserved Domain (NCBI)SART3
DMDM Disease mutations9733
Blocks (Seattle)SART3
PDB (SRS)2DO4    5CTQ    5CTR    5CTT    5JJW    5JJX    5JPZ   
PDB (PDBSum)2DO4    5CTQ    5CTR    5CTT    5JJW    5JJX    5JPZ   
PDB (IMB)2DO4    5CTQ    5CTR    5CTT    5JJW    5JJX    5JPZ   
PDB (RSDB)2DO4    5CTQ    5CTR    5CTT    5JJW    5JJX    5JPZ   
Structural Biology KnowledgeBase2DO4    5CTQ    5CTR    5CTT    5JJW    5JJX    5JPZ   
SCOP (Structural Classification of Proteins)2DO4    5CTQ    5CTR    5CTT    5JJW    5JJX    5JPZ   
CATH (Classification of proteins structures)2DO4    5CTQ    5CTR    5CTT    5JJW    5JJX    5JPZ   
SuperfamilyQ15020
Human Protein Atlas [tissue]ENSG00000075856-SART3 [tissue]
Peptide AtlasQ15020
HPRD11532
IPIIPI00006025   IPI01022779   IPI00383381   IPI00790281   IPI00719256   IPI01012420   IPI01022014   IPI01021874   IPI01022328   IPI01022491   IPI01022948   
Protein Interaction databases
DIP (DOE-UCLA)Q15020
IntAct (EBI)Q15020
FunCoupENSG00000075856
BioGRIDSART3
STRING (EMBL)SART3
ZODIACSART3
Ontologies - Pathways
QuickGOQ15020
Ontology : AmiGOspliceosomal tri-snRNP complex assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  cell morphogenesis  RNA binding  protein binding  nucleus  nucleoplasm  U6atac snRNP  cytoplasm  nucleosome assembly  regulation of gene expression  Cajal body  nuclear speck  U6 snRNA binding  U4 snRNA binding  U4 snRNA binding  U6atac snRNA binding  histone binding  U4/U6 x U5 tri-snRNP complex  homeostasis of number of cells  U4/U6 snRNP  U4atac/U6atac snRNP  hematopoietic stem cell proliferation  positive regulation of histone deubiquitination  ubiquitin-specific protease binding  
Ontology : EGO-EBIspliceosomal tri-snRNP complex assembly  spliceosomal snRNP assembly  mRNA splicing, via spliceosome  cell morphogenesis  RNA binding  protein binding  nucleus  nucleoplasm  U6atac snRNP  cytoplasm  nucleosome assembly  regulation of gene expression  Cajal body  nuclear speck  U6 snRNA binding  U4 snRNA binding  U4 snRNA binding  U6atac snRNA binding  histone binding  U4/U6 x U5 tri-snRNP complex  homeostasis of number of cells  U4/U6 snRNP  U4atac/U6atac snRNP  hematopoietic stem cell proliferation  positive regulation of histone deubiquitination  ubiquitin-specific protease binding  
NDEx NetworkSART3
Atlas of Cancer Signalling NetworkSART3
Wikipedia pathwaysSART3
Orthology - Evolution
OrthoDB9733
GeneTree (enSembl)ENSG00000075856
Phylogenetic Trees/Animal Genes : TreeFamSART3
HOVERGENQ15020
HOGENOMQ15020
Homologs : HomoloGeneSART3
Homology/Alignments : Family Browser (UCSC)SART3
Gene fusions - Rearrangements
Fusion : MitelmanSART3/CORO1C [12q23.3/12q24.11]  
Fusion : MitelmanSART3/PDGFRB [12q23.3/5q32]  [t(5;12)(q32;q23)]  
Fusion: TCGASART3 12q23.3 CORO1C 12q24.11 LUAD
Fusion: Tumor Portal SART3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSART3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SART3
dbVarSART3
ClinVarSART3
1000_GenomesSART3 
Exome Variant ServerSART3
ExAC (Exome Aggregation Consortium)ENSG00000075856
GNOMAD BrowserENSG00000075856
Genetic variants : HAPMAP9733
Genomic Variants (DGV)SART3 [DGVbeta]
DECIPHERSART3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSART3 
Mutations
ICGC Data PortalSART3 
TCGA Data PortalSART3 
Broad Tumor PortalSART3
OASIS PortalSART3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSART3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSART3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SART3
DgiDB (Drug Gene Interaction Database)SART3
DoCM (Curated mutations)SART3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SART3 (select a term)
intoGenSART3
Cancer3DSART3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611684   
Orphanet
MedgenSART3
Genetic Testing Registry SART3
NextProtQ15020 [Medical]
TSGene9733
GENETestsSART3
Target ValidationSART3
Huge Navigator SART3 [HugePedia]
snp3D : Map Gene to Disease9733
BioCentury BCIQSART3
ClinGenSART3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9733
Chemical/Pharm GKB GenePA34948
Clinical trialSART3
Miscellaneous
canSAR (ICR)SART3 (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSART3
EVEXSART3
GoPubMedSART3
iHOPSART3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:09:46 CET 2017

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