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SASH3 (SAM and SH3 domain containing 3)

Identity

Alias_namesCXorf9
chromosome X open reading frame 9
Alias_symbol (synonym)SLY
753P9
SH3D6C
HACS2
Other alias
HGNC (Hugo) SASH3
LocusID (NCBI) 54440
Atlas_Id 50587
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 128913892 and ends at 128929176 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SASH3 (Xq26.1) / ALB (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SASH3   15975
Cards
Entrez_Gene (NCBI)SASH3  54440  SAM and SH3 domain containing 3
Aliases753P9; CXorf9; HACS2; SH3D6C; 
SLY
GeneCards (Weizmann)SASH3
Ensembl hg19 (Hinxton)ENSG00000122122 [Gene_View]  chrX:128913892-128929176 [Contig_View]  SASH3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000122122 [Gene_View]  chrX:128913892-128929176 [Contig_View]  SASH3 [Vega]
ICGC DataPortalENSG00000122122
TCGA cBioPortalSASH3
AceView (NCBI)SASH3
Genatlas (Paris)SASH3
WikiGenes54440
SOURCE (Princeton)SASH3
Genetics Home Reference (NIH)SASH3
Genomic and cartography
GoldenPath hg19 (UCSC)SASH3  -     chrX:128913892-128929176 +  Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SASH3  -     Xq26.1   [Description]    (hg38-Dec_2013)
EnsemblSASH3 - Xq26.1 [CytoView hg19]  SASH3 - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBISASH3 [Mapview hg19]  SASH3 [Mapview hg38]
OMIM300441   
Gene and transcription
Genbank (Entrez)AK292023 AK296665 AK314869 AL049683 BC051881
RefSeq transcript (Entrez)NM_018990
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013260 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)SASH3
Cluster EST : UnigeneHs.61469 [ NCBI ]
CGAP (NCI)Hs.61469
Alternative Splicing GalleryENSG00000122122
Gene ExpressionSASH3 [ NCBI-GEO ]   SASH3 [ EBI - ARRAY_EXPRESS ]   SASH3 [ SEEK ]   SASH3 [ MEM ]
Gene Expression Viewer (FireBrowse)SASH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54440
GTEX Portal (Tissue expression)SASH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75995   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75995  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75995
Splice isoforms : SwissVarO75995
PhosPhoSitePlusO75995
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)rSAM/SH3_domain-containing    SAM    SAM/pointed    SH3_2    SH3_domain   
Domain families : Pfam (Sanger)SAM_2 (PF07647)    SH3_2 (PF07653)    SLY (PF12485)   
Domain families : Pfam (NCBI)pfam07647    pfam07653    pfam12485   
Domain families : Smart (EMBL)SAM (SM00454)  SH3 (SM00326)  
Conserved Domain (NCBI)SASH3
DMDM Disease mutations54440
Blocks (Seattle)SASH3
SuperfamilyO75995
Human Protein AtlasENSG00000122122
Peptide AtlasO75995
HPRD02342
IPIIPI00004504   IPI00909545   
Protein Interaction databases
DIP (DOE-UCLA)O75995
IntAct (EBI)O75995
FunCoupENSG00000122122
BioGRIDSASH3
STRING (EMBL)SASH3
ZODIACSASH3
Ontologies - Pathways
QuickGOO75995
Ontology : AmiGOpositive regulation of immunoglobulin production  positive regulation of T cell cytokine production  nucleus  cytoplasm  positive regulation of B cell proliferation  positive regulation of interferon-gamma production  positive regulation of interleukin-10 production  positive regulation of interleukin-2 production  positive regulation of interleukin-4 production  positive regulation of tumor necrosis factor production  positive regulation of T cell proliferation  positive regulation of CD4-positive, alpha-beta T cell differentiation  positive regulation of organ growth  homeostasis of number of cells within a tissue  
Ontology : EGO-EBIpositive regulation of immunoglobulin production  positive regulation of T cell cytokine production  nucleus  cytoplasm  positive regulation of B cell proliferation  positive regulation of interferon-gamma production  positive regulation of interleukin-10 production  positive regulation of interleukin-2 production  positive regulation of interleukin-4 production  positive regulation of tumor necrosis factor production  positive regulation of T cell proliferation  positive regulation of CD4-positive, alpha-beta T cell differentiation  positive regulation of organ growth  homeostasis of number of cells within a tissue  
NDEx NetworkSASH3
Atlas of Cancer Signalling NetworkSASH3
Wikipedia pathwaysSASH3
Orthology - Evolution
OrthoDB54440
GeneTree (enSembl)ENSG00000122122
Phylogenetic Trees/Animal Genes : TreeFamSASH3
HOVERGENO75995
HOGENOMO75995
Homologs : HomoloGeneSASH3
Homology/Alignments : Family Browser (UCSC)SASH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSASH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SASH3
dbVarSASH3
ClinVarSASH3
1000_GenomesSASH3 
Exome Variant ServerSASH3
ExAC (Exome Aggregation Consortium)SASH3 (select the gene name)
Genetic variants : HAPMAP54440
Genomic Variants (DGV)SASH3 [DGVbeta]
DECIPHER (Syndromes)X:128913892-128929176  ENSG00000122122
CONAN: Copy Number AnalysisSASH3 
Mutations
ICGC Data PortalSASH3 
TCGA Data PortalSASH3 
Broad Tumor PortalSASH3
OASIS PortalSASH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSASH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSASH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SASH3
DgiDB (Drug Gene Interaction Database)SASH3
DoCM (Curated mutations)SASH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SASH3 (select a term)
intoGenSASH3
Cancer3DSASH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300441   
Orphanet
MedgenSASH3
Genetic Testing Registry SASH3
NextProtO75995 [Medical]
TSGene54440
GENETestsSASH3
Huge Navigator SASH3 [HugePedia]
snp3D : Map Gene to Disease54440
BioCentury BCIQSASH3
ClinGenSASH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54440
Chemical/Pharm GKB GenePA162402388
Clinical trialSASH3
Miscellaneous
canSAR (ICR)SASH3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSASH3
EVEXSASH3
GoPubMedSASH3
iHOPSASH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:26:12 CET 2017

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