Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SATB2-AS1 (SATB2 antisense RNA 1)

Identity

Alias_namesSATB2 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SATB2-AS1
LocusID (NCBI) 150538
Atlas_Id 72985
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 199469896 and ends at 199476935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SATB2-AS1   26490
Cards
Entrez_Gene (NCBI)SATB2-AS1  150538  SATB2 antisense RNA 1
Aliases
GeneCards (Weizmann)SATB2-AS1
Ensembl hg19 (Hinxton)ENSG00000225953 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225953 [Gene_View]  chr2:199469896-199476935 [Contig_View]  SATB2-AS1 [Vega]
ICGC DataPortalENSG00000225953
TCGA cBioPortalSATB2-AS1
AceView (NCBI)SATB2-AS1
Genatlas (Paris)SATB2-AS1
WikiGenes150538
SOURCE (Princeton)SATB2-AS1
Genetics Home Reference (NIH)SATB2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SATB2-AS1  -     chr2:199469896-199476935 +  2q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SATB2-AS1  -     2q33.1   [Description]    (hg19-Feb_2009)
EnsemblSATB2-AS1 - 2q33.1 [CytoView hg19]  SATB2-AS1 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBISATB2-AS1 [Mapview hg19]  SATB2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056625 AK123639 AK290476 AK291368 AK311461
RefSeq transcript (Entrez)NM_153031
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SATB2-AS1
Cluster EST : UnigeneHs.721226 [ NCBI ]
CGAP (NCI)Hs.721226
Alternative Splicing GalleryENSG00000225953
Gene ExpressionSATB2-AS1 [ NCBI-GEO ]   SATB2-AS1 [ EBI - ARRAY_EXPRESS ]   SATB2-AS1 [ SEEK ]   SATB2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SATB2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)150538
GTEX Portal (Tissue expression)SATB2-AS1
Human Protein AtlasENSG00000225953-SATB2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SATB2-AS1
DMDM Disease mutations150538
Blocks (Seattle)SATB2-AS1
Human Protein Atlas [tissue]ENSG00000225953-SATB2-AS1 [tissue]
HPRD08118
IPIIPI00043262   
Protein Interaction databases
FunCoupENSG00000225953
BioGRIDSATB2-AS1
STRING (EMBL)SATB2-AS1
ZODIACSATB2-AS1
Ontologies - Pathways
Huge Navigator SATB2-AS1 [HugePedia]
snp3D : Map Gene to Disease150538
BioCentury BCIQSATB2-AS1
ClinGenSATB2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150538
Clinical trialSATB2-AS1
Miscellaneous
canSAR (ICR)SATB2-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSATB2-AS1
EVEXSATB2-AS1
GoPubMedSATB2-AS1
iHOPSATB2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:26:19 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.