| Nomenclature |
|---|
| HGNC (Hugo) | SATB2 21637 |
| Cards |
|---|
| Entrez_Gene (NCBI) | SATB2 23314 SATB homeobox 2 |
| Aliases | GLSS |
| GeneCards (Weizmann) | SATB2 |
| Ensembl hg19 (Hinxton) | ENSG00000119042 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000119042 [Gene_View] ENSG00000119042 [Sequence] chr2:199269500-199471266 [Contig_View] SATB2 [Vega] |
| ICGC DataPortal | ENSG00000119042 |
| TCGA cBioPortal | SATB2 |
| AceView (NCBI) | SATB2 |
| Genatlas (Paris) | SATB2 |
| WikiGenes | 23314 |
| SOURCE (Princeton) | SATB2 |
| Genetics Home Reference (NIH) | SATB2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | SATB2 - chr2:199269500-199471266 - 2q33.1 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | SATB2 - 2q33.1 [Description] (hg19-Feb_2009) |
| Ensembl | SATB2 - 2q33.1 [CytoView hg19] SATB2 - 2q33.1 [CytoView hg38] |
| Mapping of homologs : NCBI | SATB2 [Mapview hg19] SATB2 [Mapview hg38] |
| OMIM | 608148 612313 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB028957 AB209376 AJ438951 AK025127 AK056638 |
| RefSeq transcript (Entrez) | NM_001172509 NM_001172517 NM_015265 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | SATB2 |
| Cluster EST : Unigene | Hs.516617 [ NCBI ] |
| CGAP (NCI) | Hs.516617 |
| Alternative Splicing Gallery | ENSG00000119042 |
| Gene Expression | SATB2 [ NCBI-GEO ] SATB2 [ EBI - ARRAY_EXPRESS ]
SATB2 [ SEEK ] SATB2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | SATB2 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 23314 |
| GTEX Portal (Tissue expression) | SATB2 |
| Human Protein Atlas | ENSG00000119042-SATB2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9UPW6 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9UPW6 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9UPW6 |
| Splice isoforms : SwissVar | Q9UPW6 |
| PhosPhoSitePlus | Q9UPW6 |
| Domaine pattern : Prosite (Expaxy) | CUT (PS51042) HOMEOBOX_2 (PS50071) |
| Domains : Interpro (EBI) | CUT_dom CUTL Homeobox-like_sf Homeobox_dom Lambda_DNA-bd_dom_sf SATB_CUTL_sf SATB_ULD_sf ULD |
| Domain families : Pfam (Sanger) | CUT (PF02376) CUTL (PF16557) Homeobox (PF00046) ULD (PF16534) |
| Domain families : Pfam (NCBI) | pfam02376 pfam16557 pfam00046 pfam16534 |
| Domain families : Smart (EMBL) | CUT (SM01109) HOX (SM00389) |
| Conserved Domain (NCBI) | SATB2 |
| DMDM Disease mutations | 23314 |
| Blocks (Seattle) | SATB2 |
| PDB (SRS) | 1WI3 1WIZ 2CSF |
| PDB (PDBSum) | 1WI3 1WIZ 2CSF |
| PDB (IMB) | 1WI3 1WIZ 2CSF |
| PDB (RSDB) | 1WI3 1WIZ 2CSF |
| Structural Biology KnowledgeBase | 1WI3 1WIZ 2CSF |
| SCOP (Structural Classification of Proteins) | 1WI3 1WIZ 2CSF |
| CATH (Classification of proteins structures) | 1WI3 1WIZ 2CSF |
| Superfamily | Q9UPW6 |
| Human Protein Atlas [tissue] | ENSG00000119042-SATB2 [tissue] |
| Peptide Atlas | Q9UPW6 |
| HPRD | 12178 |
| IPI | IPI00010433 IPI00386234 IPI00924512 IPI00926670 IPI00651702 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9UPW6 |
| IntAct (EBI) | Q9UPW6 |
| FunCoup | ENSG00000119042 |
| BioGRID | SATB2 |
| STRING (EMBL) | SATB2 |
| ZODIAC | SATB2 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9UPW6 |
| Ontology : AmiGO | histone deacetylase complex negative regulation of transcription by RNA polymerase II RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding neuron migration osteoblast development chromatin binding protein binding nucleus nucleoplasm nucleoplasm transcription factor complex chromatin remodeling regulation of transcription by RNA polymerase II transcription by RNA polymerase II embryonic pattern specification nuclear matrix commitment of neuronal cell to specific neuron type in forebrain sequence-specific DNA binding positive regulation of transcription by RNA polymerase II embryonic skeletal system morphogenesis cartilage development roof of mouth development cellular response to organic substance |
| Ontology : EGO-EBI | histone deacetylase complex negative regulation of transcription by RNA polymerase II RNA polymerase II proximal promoter sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding RNA polymerase II transcription factor activity, sequence-specific DNA binding transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding neuron migration osteoblast development chromatin binding protein binding nucleus nucleoplasm nucleoplasm transcription factor complex chromatin remodeling regulation of transcription by RNA polymerase II transcription by RNA polymerase II embryonic pattern specification nuclear matrix commitment of neuronal cell to specific neuron type in forebrain sequence-specific DNA binding positive regulation of transcription by RNA polymerase II embryonic skeletal system morphogenesis cartilage development roof of mouth development cellular response to organic substance |
| NDEx Network | SATB2 |
| Atlas of Cancer Signalling Network | SATB2 |
| Wikipedia pathways | SATB2 |
| Orthology - Evolution |
|---|
| OrthoDB | 23314 |
| GeneTree (enSembl) | ENSG00000119042 |
| Phylogenetic Trees/Animal Genes : TreeFam | SATB2 |
| HOVERGEN | Q9UPW6 |
| HOGENOM | Q9UPW6 |
| Homologs : HomoloGene | SATB2 |
| Homology/Alignments : Family Browser (UCSC) | SATB2 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Mitelman | HDAC4/SATB2 [2q37.3/2q33.1] [t(2;2)(q33;q37)] |
| Fusion Portal | HDAC4 2q37.3 SATB2 2q33.1 BLCA |
| Fusion : Quiver | SATB2 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | SATB2 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | SATB2 |
| dbVar | SATB2 |
| ClinVar | SATB2 |
| 1000_Genomes | SATB2 |
| Exome Variant Server | SATB2 |
| ExAC (Exome Aggregation Consortium) | ENSG00000119042 |
| GNOMAD Browser | ENSG00000119042 |
| Varsome Browser | SATB2 |
| Genetic variants : HAPMAP | 23314 |
| Genomic Variants (DGV) | SATB2 [DGVbeta] |
| DECIPHER | SATB2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | SATB2 |
| Mutations |
|---|
| ICGC Data Portal | SATB2 |
| TCGA Data Portal | SATB2 |
| Broad Tumor Portal | SATB2 |
| OASIS Portal | SATB2 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | SATB2 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | SATB2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search SATB2 |
| DgiDB (Drug Gene Interaction Database) | SATB2 |
| DoCM (Curated mutations) | SATB2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | SATB2 (select a term) |
| intoGen | SATB2 |
| Cancer3D | SATB2(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 608148 612313 |
| Orphanet | 19604 19605 |
| DisGeNET | SATB2 |
| Medgen | SATB2 |
| Genetic Testing Registry | SATB2
|
| NextProt | Q9UPW6 [Medical] |
| TSGene | 23314 |
| GENETests | SATB2 |
| Target Validation | SATB2 |
| Huge Navigator |
SATB2 [HugePedia] |
| snp3D : Map Gene to Disease | 23314 |
| BioCentury BCIQ | SATB2 |
| ClinGen | SATB2 (curated) |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 23314 |
| Chemical/Pharm GKB Gene | PA128394624 |
| Clinical trial | SATB2 |
| Miscellaneous |
|---|
| canSAR (ICR) | SATB2 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 88 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | SATB2 |
| EVEX | SATB2 |
| GoPubMed | SATB2 |
| iHOP | SATB2 |
