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SATL1 (spermidine/spermine N1-acetyl transferase-like 1)

Identity

Other alias-
HGNC (Hugo) SATL1
LocusID (NCBI) 340562
Atlas_Id 72986
Location Xq21.1  [Link to chromosome band Xq21]
Location_base_pair Starts at 85092286 and ends at 85108968 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SATL1   27992
Cards
Entrez_Gene (NCBI)SATL1  340562  spermidine/spermine N1-acetyl transferase-like 1
Aliases
GeneCards (Weizmann)SATL1
Ensembl hg19 (Hinxton)ENSG00000184788 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184788 [Gene_View]  chrX:85092286-85108968 [Contig_View]  SATL1 [Vega]
ICGC DataPortalENSG00000184788
TCGA cBioPortalSATL1
AceView (NCBI)SATL1
Genatlas (Paris)SATL1
WikiGenes340562
SOURCE (Princeton)SATL1
Genetics Home Reference (NIH)SATL1
Genomic and cartography
GoldenPath hg38 (UCSC)SATL1  -     chrX:85092286-85108968 -  Xq21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SATL1  -     Xq21.1   [Description]    (hg19-Feb_2009)
EnsemblSATL1 - Xq21.1 [CytoView hg19]  SATL1 - Xq21.1 [CytoView hg38]
Mapping of homologs : NCBISATL1 [Mapview hg19]  SATL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043215 BC126401
RefSeq transcript (Entrez)NM_001012980 NM_001163541
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SATL1
Cluster EST : UnigeneHs.640783 [ NCBI ]
CGAP (NCI)Hs.640783
Alternative Splicing GalleryENSG00000184788
Gene ExpressionSATL1 [ NCBI-GEO ]   SATL1 [ EBI - ARRAY_EXPRESS ]   SATL1 [ SEEK ]   SATL1 [ MEM ]
Gene Expression Viewer (FireBrowse)SATL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340562
GTEX Portal (Tissue expression)SATL1
Human Protein AtlasENSG00000184788-SATL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VE3
Splice isoforms : SwissVarQ86VE3
PhosPhoSitePlusQ86VE3
Domaine pattern : Prosite (Expaxy)GNAT (PS51186)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    GNAT_dom   
Domain families : Pfam (Sanger)Acetyltransf_1 (PF00583)   
Domain families : Pfam (NCBI)pfam00583   
Conserved Domain (NCBI)SATL1
DMDM Disease mutations340562
Blocks (Seattle)SATL1
SuperfamilyQ86VE3
Human Protein Atlas [tissue]ENSG00000184788-SATL1 [tissue]
Peptide AtlasQ86VE3
HPRD18497
IPIIPI00844497   IPI00328878   IPI00966659   
Protein Interaction databases
DIP (DOE-UCLA)Q86VE3
IntAct (EBI)Q86VE3
FunCoupENSG00000184788
BioGRIDSATL1
STRING (EMBL)SATL1
ZODIACSATL1
Ontologies - Pathways
QuickGOQ86VE3
Ontology : AmiGOdiamine N-acetyltransferase activity  cytosol  spermidine binding  spermidine acetylation  spermine catabolic process  
Ontology : EGO-EBIdiamine N-acetyltransferase activity  cytosol  spermidine binding  spermidine acetylation  spermine catabolic process  
NDEx NetworkSATL1
Atlas of Cancer Signalling NetworkSATL1
Wikipedia pathwaysSATL1
Orthology - Evolution
OrthoDB340562
GeneTree (enSembl)ENSG00000184788
Phylogenetic Trees/Animal Genes : TreeFamSATL1
HOVERGENQ86VE3
HOGENOMQ86VE3
Homologs : HomoloGeneSATL1
Homology/Alignments : Family Browser (UCSC)SATL1
Gene fusions - Rearrangements
Tumor Fusion PortalSATL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSATL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SATL1
dbVarSATL1
ClinVarSATL1
1000_GenomesSATL1 
Exome Variant ServerSATL1
ExAC (Exome Aggregation Consortium)ENSG00000184788
GNOMAD BrowserENSG00000184788
Genetic variants : HAPMAP340562
Genomic Variants (DGV)SATL1 [DGVbeta]
DECIPHERSATL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSATL1 
Mutations
ICGC Data PortalSATL1 
TCGA Data PortalSATL1 
Broad Tumor PortalSATL1
OASIS PortalSATL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSATL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSATL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SATL1
DgiDB (Drug Gene Interaction Database)SATL1
DoCM (Curated mutations)SATL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SATL1 (select a term)
intoGenSATL1
Cancer3DSATL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSATL1
MedgenSATL1
Genetic Testing Registry SATL1
NextProtQ86VE3 [Medical]
TSGene340562
GENETestsSATL1
Target ValidationSATL1
Huge Navigator SATL1 [HugePedia]
snp3D : Map Gene to Disease340562
BioCentury BCIQSATL1
ClinGenSATL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340562
Chemical/Pharm GKB GenePA134969637
Clinical trialSATL1
Miscellaneous
canSAR (ICR)SATL1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSATL1
EVEXSATL1
GoPubMedSATL1
iHOPSATL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:32 CET 2017

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