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SAXO1 (stabilizer of axonemal microtubules 1)

Identity

Alias_namesC9orf138
FAM154A
chromosome 9 open reading frame 138
family with sequence similarity 154, member A
Alias_symbol (synonym)MGC35182
Other alias
HGNC (Hugo) SAXO1
LocusID (NCBI) 158297
Atlas_Id 53266
Location 9p22.1  [Link to chromosome band 9p22]
Location_base_pair Starts at 18927660 and ends at 19049354 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAXO1   28566
Cards
Entrez_Gene (NCBI)SAXO1  158297  stabilizer of axonemal microtubules 1
AliasesC9orf138; FAM154A
GeneCards (Weizmann)SAXO1
Ensembl hg19 (Hinxton)ENSG00000155875 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155875 [Gene_View]  chr9:18927660-19049354 [Contig_View]  SAXO1 [Vega]
ICGC DataPortalENSG00000155875
TCGA cBioPortalSAXO1
AceView (NCBI)SAXO1
Genatlas (Paris)SAXO1
WikiGenes158297
SOURCE (Princeton)SAXO1
Genetics Home Reference (NIH)SAXO1
Genomic and cartography
GoldenPath hg38 (UCSC)SAXO1  -     chr9:18927660-19049354 -  9p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAXO1  -     9p22.1   [Description]    (hg19-Feb_2009)
EnsemblSAXO1 - 9p22.1 [CytoView hg19]  SAXO1 - 9p22.1 [CytoView hg38]
Mapping of homologs : NCBISAXO1 [Mapview hg19]  SAXO1 [Mapview hg38]
OMIM616292   
Gene and transcription
Genbank (Entrez)AA992255 AI808568 AK057474 AK292245 AW079914
RefSeq transcript (Entrez)NM_001287049 NM_001287050 NM_153707
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAXO1
Cluster EST : UnigeneHs.731593 [ NCBI ]
CGAP (NCI)Hs.731593
Alternative Splicing GalleryENSG00000155875
Gene ExpressionSAXO1 [ NCBI-GEO ]   SAXO1 [ EBI - ARRAY_EXPRESS ]   SAXO1 [ SEEK ]   SAXO1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAXO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158297
GTEX Portal (Tissue expression)SAXO1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYX7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYX7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYX7
Splice isoforms : SwissVarQ8IYX7
PhosPhoSitePlusQ8IYX7
Domains : Interpro (EBI)SAXO1/2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAXO1
DMDM Disease mutations158297
Blocks (Seattle)SAXO1
SuperfamilyQ8IYX7
Human Protein AtlasENSG00000155875
Peptide AtlasQ8IYX7
HPRD16676
IPIIPI00217912   IPI01010930   IPI00645276   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYX7
IntAct (EBI)Q8IYX7
FunCoupENSG00000155875
BioGRIDSAXO1
STRING (EMBL)SAXO1
ZODIACSAXO1
Ontologies - Pathways
QuickGOQ8IYX7
Ontology : AmiGOprotein binding  centriole  axonemal microtubule  microtubule binding  cold acclimation  cell projection organization  motile cilium  ciliary basal body  sperm flagellum  positive regulation of cilium assembly  cellular response to cold  
Ontology : EGO-EBIprotein binding  centriole  axonemal microtubule  microtubule binding  cold acclimation  cell projection organization  motile cilium  ciliary basal body  sperm flagellum  positive regulation of cilium assembly  cellular response to cold  
NDEx NetworkSAXO1
Atlas of Cancer Signalling NetworkSAXO1
Wikipedia pathwaysSAXO1
Orthology - Evolution
OrthoDB158297
GeneTree (enSembl)ENSG00000155875
Phylogenetic Trees/Animal Genes : TreeFamSAXO1
HOVERGENQ8IYX7
HOGENOMQ8IYX7
Homologs : HomoloGeneSAXO1
Homology/Alignments : Family Browser (UCSC)SAXO1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAXO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAXO1
dbVarSAXO1
ClinVarSAXO1
1000_GenomesSAXO1 
Exome Variant ServerSAXO1
ExAC (Exome Aggregation Consortium)SAXO1 (select the gene name)
Genetic variants : HAPMAP158297
Genomic Variants (DGV)SAXO1 [DGVbeta]
DECIPHERSAXO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAXO1 
Mutations
ICGC Data PortalSAXO1 
TCGA Data PortalSAXO1 
Broad Tumor PortalSAXO1
OASIS PortalSAXO1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSAXO1
BioMutasearch SAXO1
DgiDB (Drug Gene Interaction Database)SAXO1
DoCM (Curated mutations)SAXO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAXO1 (select a term)
intoGenSAXO1
Cancer3DSAXO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616292   
Orphanet
MedgenSAXO1
Genetic Testing Registry SAXO1
NextProtQ8IYX7 [Medical]
TSGene158297
GENETestsSAXO1
Target ValidationSAXO1
Huge Navigator SAXO1 [HugePedia]
snp3D : Map Gene to Disease158297
BioCentury BCIQSAXO1
ClinGenSAXO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158297
Chemical/Pharm GKB GenePA162386652
Clinical trialSAXO1
Miscellaneous
canSAR (ICR)SAXO1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAXO1
EVEXSAXO1
GoPubMedSAXO1
iHOPSAXO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:30:00 CEST 2017

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