Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SAXO2 (stabilizer of axonemal microtubules 2)

Identity

Alias_namesFAM154B
family with sequence similarity 154, member B
Alias_symbol (synonym)DKFZp666G057
Other alias
HGNC (Hugo) SAXO2
LocusID (NCBI) 283726
Atlas_Id 77358
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82262811 and ends at 82284926 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SAXO2   33727
Cards
Entrez_Gene (NCBI)SAXO2  283726  stabilizer of axonemal microtubules 2
AliasesFAM154B
GeneCards (Weizmann)SAXO2
Ensembl hg19 (Hinxton)ENSG00000188659 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188659 [Gene_View]  chr15:82262811-82284926 [Contig_View]  SAXO2 [Vega]
ICGC DataPortalENSG00000188659
TCGA cBioPortalSAXO2
AceView (NCBI)SAXO2
Genatlas (Paris)SAXO2
WikiGenes283726
SOURCE (Princeton)SAXO2
Genetics Home Reference (NIH)SAXO2
Genomic and cartography
GoldenPath hg38 (UCSC)SAXO2  -     chr15:82262811-82284926 +  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAXO2  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblSAXO2 - 15q25.2 [CytoView hg19]  SAXO2 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBISAXO2 [Mapview hg19]  SAXO2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI634060 AK304339 AL833762 BC144647 BF942184
RefSeq transcript (Entrez)NM_001008226 NM_001348699 NM_001348700 NM_001348701 NM_001348702 NM_001348703 NM_001348704 NM_001348705 NM_001348706
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAXO2
Cluster EST : UnigeneHs.459117 [ NCBI ]
CGAP (NCI)Hs.459117
Alternative Splicing GalleryENSG00000188659
Gene ExpressionSAXO2 [ NCBI-GEO ]   SAXO2 [ EBI - ARRAY_EXPRESS ]   SAXO2 [ SEEK ]   SAXO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SAXO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283726
GTEX Portal (Tissue expression)SAXO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ658L1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ658L1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ658L1
Splice isoforms : SwissVarQ658L1
PhosPhoSitePlusQ658L1
Domains : Interpro (EBI)SAXO1/2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SAXO2
DMDM Disease mutations283726
Blocks (Seattle)SAXO2
SuperfamilyQ658L1
Human Protein AtlasENSG00000188659
Peptide AtlasQ658L1
HPRD16817
IPIIPI00176938   IPI00939244   
Protein Interaction databases
DIP (DOE-UCLA)Q658L1
IntAct (EBI)Q658L1
FunCoupENSG00000188659
BioGRIDSAXO2
STRING (EMBL)SAXO2
ZODIACSAXO2
Ontologies - Pathways
QuickGOQ658L1
Ontology : AmiGOmicrotubule binding  
Ontology : EGO-EBImicrotubule binding  
NDEx NetworkSAXO2
Atlas of Cancer Signalling NetworkSAXO2
Wikipedia pathwaysSAXO2
Orthology - Evolution
OrthoDB283726
GeneTree (enSembl)ENSG00000188659
Phylogenetic Trees/Animal Genes : TreeFamSAXO2
HOVERGENQ658L1
HOGENOMQ658L1
Homologs : HomoloGeneSAXO2
Homology/Alignments : Family Browser (UCSC)SAXO2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAXO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAXO2
dbVarSAXO2
ClinVarSAXO2
1000_GenomesSAXO2 
Exome Variant ServerSAXO2
ExAC (Exome Aggregation Consortium)SAXO2 (select the gene name)
Genetic variants : HAPMAP283726
Genomic Variants (DGV)SAXO2 [DGVbeta]
DECIPHERSAXO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAXO2 
Mutations
ICGC Data PortalSAXO2 
TCGA Data PortalSAXO2 
Broad Tumor PortalSAXO2
OASIS PortalSAXO2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSAXO2
BioMutasearch SAXO2
DgiDB (Drug Gene Interaction Database)SAXO2
DoCM (Curated mutations)SAXO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAXO2 (select a term)
intoGenSAXO2
Cancer3DSAXO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSAXO2
Genetic Testing Registry SAXO2
NextProtQ658L1 [Medical]
TSGene283726
GENETestsSAXO2
Target ValidationSAXO2
Huge Navigator SAXO2 [HugePedia]
snp3D : Map Gene to Disease283726
BioCentury BCIQSAXO2
ClinGenSAXO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283726
Chemical/Pharm GKB GenePA162386665
Clinical trialSAXO2
Miscellaneous
canSAR (ICR)SAXO2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAXO2
EVEXSAXO2
GoPubMedSAXO2
iHOPSAXO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:12 CEST 2017

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