Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SAYSD1 (SAYSVFN motif domain containing 1)

Identity

Alias_namesC6orf64
chromosome 6 open reading frame 64
Alias_symbol (synonym)FLJ11101
Other alias
HGNC (Hugo) SAYSD1
LocusID (NCBI) 55776
Atlas_Id 72987
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 39104063 and ends at 39115186 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SAYSD1 (6p21.2) / MAP2K4 (17p12)SAYSD1 (6p21.2) / PACSIN1 (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p21;p21) SAYSD1/PACSIN1


External links

Nomenclature
HGNC (Hugo)SAYSD1   21025
Cards
Entrez_Gene (NCBI)SAYSD1  55776  SAYSVFN motif domain containing 1
AliasesC6orf64
GeneCards (Weizmann)SAYSD1
Ensembl hg19 (Hinxton)ENSG00000112167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112167 [Gene_View]  ENSG00000112167 [Sequence]  chr6:39104063-39115186 [Contig_View]  SAYSD1 [Vega]
ICGC DataPortalENSG00000112167
TCGA cBioPortalSAYSD1
AceView (NCBI)SAYSD1
Genatlas (Paris)SAYSD1
WikiGenes55776
SOURCE (Princeton)SAYSD1
Genetics Home Reference (NIH)SAYSD1
Genomic and cartography
GoldenPath hg38 (UCSC)SAYSD1  -     chr6:39104063-39115186 -  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SAYSD1  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblSAYSD1 - 6p21.2 [CytoView hg19]  SAYSD1 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBISAYSD1 [Mapview hg19]  SAYSD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086405 AK001963 AK124992 AL136839 BC022007
RefSeq transcript (Entrez)NM_001304793 NM_018322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SAYSD1
Cluster EST : UnigeneHs.58382 [ NCBI ]
CGAP (NCI)Hs.58382
Alternative Splicing GalleryENSG00000112167
Gene ExpressionSAYSD1 [ NCBI-GEO ]   SAYSD1 [ EBI - ARRAY_EXPRESS ]   SAYSD1 [ SEEK ]   SAYSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)SAYSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55776
GTEX Portal (Tissue expression)SAYSD1
Human Protein AtlasENSG00000112167-SAYSD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPB0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPB0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPB0
Splice isoforms : SwissVarQ9NPB0
PhosPhoSitePlusQ9NPB0
Domains : Interpro (EBI)Uncharacterised_SAYSvFN   
Domain families : Pfam (Sanger)SAYSvFN (PF10260)   
Domain families : Pfam (NCBI)pfam10260   
Conserved Domain (NCBI)SAYSD1
DMDM Disease mutations55776
Blocks (Seattle)SAYSD1
SuperfamilyQ9NPB0
Human Protein Atlas [tissue]ENSG00000112167-SAYSD1 [tissue]
Peptide AtlasQ9NPB0
HPRD12892
IPIIPI00019560   IPI00607797   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPB0
IntAct (EBI)Q9NPB0
FunCoupENSG00000112167
BioGRIDSAYSD1
STRING (EMBL)SAYSD1
ZODIACSAYSD1
Ontologies - Pathways
QuickGOQ9NPB0
Ontology : AmiGOintegral component of membrane  cytoplasmic vesicle membrane  intracellular membrane-bounded organelle  
Ontology : EGO-EBIintegral component of membrane  cytoplasmic vesicle membrane  intracellular membrane-bounded organelle  
NDEx NetworkSAYSD1
Atlas of Cancer Signalling NetworkSAYSD1
Wikipedia pathwaysSAYSD1
Orthology - Evolution
OrthoDB55776
GeneTree (enSembl)ENSG00000112167
Phylogenetic Trees/Animal Genes : TreeFamSAYSD1
HOVERGENQ9NPB0
HOGENOMQ9NPB0
Homologs : HomoloGeneSAYSD1
Homology/Alignments : Family Browser (UCSC)SAYSD1
Gene fusions - Rearrangements
Fusion : QuiverSAYSD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSAYSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SAYSD1
dbVarSAYSD1
ClinVarSAYSD1
1000_GenomesSAYSD1 
Exome Variant ServerSAYSD1
ExAC (Exome Aggregation Consortium)ENSG00000112167
GNOMAD BrowserENSG00000112167
Varsome BrowserSAYSD1
Genetic variants : HAPMAP55776
Genomic Variants (DGV)SAYSD1 [DGVbeta]
DECIPHERSAYSD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSAYSD1 
Mutations
ICGC Data PortalSAYSD1 
TCGA Data PortalSAYSD1 
Broad Tumor PortalSAYSD1
OASIS PortalSAYSD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSAYSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SAYSD1
DgiDB (Drug Gene Interaction Database)SAYSD1
DoCM (Curated mutations)SAYSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SAYSD1 (select a term)
intoGenSAYSD1
Cancer3DSAYSD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSAYSD1
MedgenSAYSD1
Genetic Testing Registry SAYSD1
NextProtQ9NPB0 [Medical]
TSGene55776
GENETestsSAYSD1
Target ValidationSAYSD1
Huge Navigator SAYSD1 [HugePedia]
snp3D : Map Gene to Disease55776
BioCentury BCIQSAYSD1
ClinGenSAYSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55776
Chemical/Pharm GKB GenePA128394689
Clinical trialSAYSD1
Miscellaneous
canSAR (ICR)SAYSD1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSAYSD1
EVEXSAYSD1
GoPubMedSAYSD1
iHOPSAYSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:28:05 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.