Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SBDSP1 (SBDS, ribosome maturation factor pseudogene 1)

Identity

Alias_namesSBDSP
Shwachman-Bodian-Diamond syndrome pseudogene
Other alias
HGNC (Hugo) SBDSP1
LocusID (NCBI) 155370
Atlas_Id 72988
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 72829373 and ends at 72834006 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SBDSP1 (7q11.23) / MCM7 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SBDSP1   21646
Cards
Entrez_Gene (NCBI)SBDSP1  155370  SBDS, ribosome maturation factor pseudogene 1
AliasesSBDSP
GeneCards (Weizmann)SBDSP1
Ensembl hg19 (Hinxton)ENSG00000225648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225648 [Gene_View]  chr7:72829373-72834006 [Contig_View]  SBDSP1 [Vega]
ICGC DataPortalENSG00000225648
TCGA cBioPortalSBDSP1
AceView (NCBI)SBDSP1
Genatlas (Paris)SBDSP1
WikiGenes155370
SOURCE (Princeton)SBDSP1
Genetics Home Reference (NIH)SBDSP1
Genomic and cartography
GoldenPath hg38 (UCSC)SBDSP1  -     chr7:72829373-72834006 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SBDSP1  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblSBDSP1 - 7q11.23 [CytoView hg19]  SBDSP1 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISBDSP1 [Mapview hg19]  SBDSP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC010183 BG212607 BM974324 BQ441749 CB216674
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SBDSP1
Cluster EST : UnigeneHs.585053 [ NCBI ]
CGAP (NCI)Hs.585053
Alternative Splicing GalleryENSG00000225648
Gene ExpressionSBDSP1 [ NCBI-GEO ]   SBDSP1 [ EBI - ARRAY_EXPRESS ]   SBDSP1 [ SEEK ]   SBDSP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SBDSP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)155370
GTEX Portal (Tissue expression)SBDSP1
Human Protein AtlasENSG00000225648-SBDSP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SBDSP1
DMDM Disease mutations155370
Blocks (Seattle)SBDSP1
Human Protein Atlas [tissue]ENSG00000225648-SBDSP1 [tissue]
Protein Interaction databases
FunCoupENSG00000225648
BioGRIDSBDSP1
STRING (EMBL)SBDSP1
ZODIACSBDSP1
Ontologies - Pathways
Huge Navigator SBDSP1 [HugePedia]
snp3D : Map Gene to Disease155370
BioCentury BCIQSBDSP1
ClinGenSBDSP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD155370
Chemical/Pharm GKB GenePA134953248
Clinical trialSBDSP1
Miscellaneous
canSAR (ICR)SBDSP1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSBDSP1
EVEXSBDSP1
GoPubMedSBDSP1
iHOPSBDSP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Feb 23 18:50:37 CET 2018
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