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SBNO1 (strawberry notch homolog 1)

Identity

Alias_namessno
Alias_symbol (synonym)MOP3
FLJ10701
FLJ10833
Sno
Other alias
HGNC (Hugo) SBNO1
LocusID (NCBI) 55206
Atlas_Id 47272
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 123289109 and ends at 123365209 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHRAC1 (8q24.3) / SBNO1 (12q24.31)CNTN1 (12q12) / SBNO1 (12q24.31)HECTD4 (12q24.13) / SBNO1 (12q24.31)
RSRC2 (12q24.31) / SBNO1 (12q24.31)C12orf51 SBNO1 12q24.31RSRC2 12q24.31 / SBNO1 12q24.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SBNO1   22973
Cards
Entrez_Gene (NCBI)SBNO1  55206  strawberry notch homolog 1
AliasesMOP3; Sno
GeneCards (Weizmann)SBNO1
Ensembl hg19 (Hinxton)ENSG00000139697 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139697 [Gene_View]  chr12:123289109-123365209 [Contig_View]  SBNO1 [Vega]
ICGC DataPortalENSG00000139697
TCGA cBioPortalSBNO1
AceView (NCBI)SBNO1
Genatlas (Paris)SBNO1
WikiGenes55206
SOURCE (Princeton)SBNO1
Genetics Home Reference (NIH)SBNO1
Genomic and cartography
GoldenPath hg38 (UCSC)SBNO1  -     chr12:123289109-123365209 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SBNO1  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblSBNO1 - 12q24.31 [CytoView hg19]  SBNO1 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBISBNO1 [Mapview hg19]  SBNO1 [Mapview hg38]
OMIM614274   
Gene and transcription
Genbank (Entrez)AB014772 AF086046 AK001563 AK001695 AK024128
RefSeq transcript (Entrez)NM_001167856 NM_018183
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SBNO1
Cluster EST : UnigeneHs.7012 [ NCBI ]
CGAP (NCI)Hs.7012
Alternative Splicing GalleryENSG00000139697
Gene ExpressionSBNO1 [ NCBI-GEO ]   SBNO1 [ EBI - ARRAY_EXPRESS ]   SBNO1 [ SEEK ]   SBNO1 [ MEM ]
Gene Expression Viewer (FireBrowse)SBNO1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55206
GTEX Portal (Tissue expression)SBNO1
Human Protein AtlasENSG00000139697-SBNO1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA3KN83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA3KN83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA3KN83
Splice isoforms : SwissVarA3KN83
PhosPhoSitePlusA3KN83
Domains : Interpro (EBI)P-loop_NTPase    SBNO_Helicase_C_dom    SNO   
Domain families : Pfam (Sanger)Helicase_C_4 (PF13871)   
Domain families : Pfam (NCBI)pfam13871   
Conserved Domain (NCBI)SBNO1
DMDM Disease mutations55206
Blocks (Seattle)SBNO1
SuperfamilyA3KN83
Human Protein Atlas [tissue]ENSG00000139697-SBNO1 [tissue]
Peptide AtlasA3KN83
HPRD11533
IPIIPI00023649   IPI00879170   IPI00879441   IPI00879053   IPI01025144   
Protein Interaction databases
DIP (DOE-UCLA)A3KN83
IntAct (EBI)A3KN83
FunCoupENSG00000139697
BioGRIDSBNO1
STRING (EMBL)SBNO1
ZODIACSBNO1
Ontologies - Pathways
QuickGOA3KN83
Ontology : AmiGOmolecular_function  cellular_component  regulation of transcription, DNA-templated  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  regulation of transcription, DNA-templated  biological_process  
NDEx NetworkSBNO1
Atlas of Cancer Signalling NetworkSBNO1
Wikipedia pathwaysSBNO1
Orthology - Evolution
OrthoDB55206
GeneTree (enSembl)ENSG00000139697
Phylogenetic Trees/Animal Genes : TreeFamSBNO1
HOVERGENA3KN83
HOGENOMA3KN83
Homologs : HomoloGeneSBNO1
Homology/Alignments : Family Browser (UCSC)SBNO1
Gene fusions - Rearrangements
Fusion : MitelmanHECTD4/SBNO1 [12q24.13/12q24.31]  [t(12;12)(q24;q24)]  
Fusion : MitelmanRSRC2/SBNO1 [12q24.31/12q24.31]  [t(12;12)(q24;q24)]  
Fusion: TCGA_MDACCC12orf51 SBNO1 12q24.31 BRCA
Fusion: TCGA_MDACCRSRC2 12q24.31 SBNO1 12q24.31 LUAD
Tumor Fusion PortalSBNO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSBNO1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SBNO1
dbVarSBNO1
ClinVarSBNO1
1000_GenomesSBNO1 
Exome Variant ServerSBNO1
ExAC (Exome Aggregation Consortium)ENSG00000139697
GNOMAD BrowserENSG00000139697
Genetic variants : HAPMAP55206
Genomic Variants (DGV)SBNO1 [DGVbeta]
DECIPHERSBNO1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSBNO1 
Mutations
ICGC Data PortalSBNO1 
TCGA Data PortalSBNO1 
Broad Tumor PortalSBNO1
OASIS PortalSBNO1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSBNO1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSBNO1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SBNO1
DgiDB (Drug Gene Interaction Database)SBNO1
DoCM (Curated mutations)SBNO1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SBNO1 (select a term)
intoGenSBNO1
Cancer3DSBNO1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614274   
Orphanet
DisGeNETSBNO1
MedgenSBNO1
Genetic Testing Registry SBNO1
NextProtA3KN83 [Medical]
TSGene55206
GENETestsSBNO1
Target ValidationSBNO1
Huge Navigator SBNO1 [HugePedia]
snp3D : Map Gene to Disease55206
BioCentury BCIQSBNO1
ClinGenSBNO1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55206
Chemical/Pharm GKB GenePA134967986
Clinical trialSBNO1
Miscellaneous
canSAR (ICR)SBNO1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSBNO1
EVEXSBNO1
GoPubMedSBNO1
iHOPSBNO1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:33:33 CET 2017

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