Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SBNO2 (strawberry notch homolog 2)

Identity

Alias (NCBI)KIAA0963
SNO
STNO
HGNC (Hugo) SBNO2
HGNC Alias symbFLJ00173
Stno
Sno
HGNC Previous nameKIAA0963
HGNC Previous nameKIAA0963
 strawberry notch homolog 2 (Drosophila)
LocusID (NCBI) 22904
Atlas_Id 54600
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1107638 and ends at 1174268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CBARP (19p13.3) / SBNO2 (19p13.3)FIP1L1 (4q12) / SBNO2 (19p13.3)MIDN (19p13.3) / SBNO2 (19p13.3)
SBNO2 (19p13.3) / ADARB1 (21q22.3)SBNO2 (19p13.3) / CBARP (19p13.3)SBNO2 (19p13.3) / MGC16121 ()
SBNO2 (19p13.3) / PIAS4 (19p13.3)SBNO2 (19p13.3) / SERINC2 (1p35.2)SBNO2 (19p13.3) / SMCP (1q21.3)
SBNO2 (19p13.3) / TPGS1 (19p13.3)TMEM259 (19p13.3) / SBNO2 (19p13.3)FIP1L1 4q12 / SBNO2 19p13.3
SBNO2 19p13.3 / ADARB1 21q22.3SBNO2 19p13.3 C19orf20SBNO2 19p13.3 C19orf26
SBNO2 19p13.3 / PIAS4 19p13.3SBNO2 19p13.3 / SERINC2 1p35.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SBNO2   29158
Cards
Entrez_Gene (NCBI)SBNO2    strawberry notch homolog 2
AliasesKIAA0963; SNO; STNO
GeneCards (Weizmann)SBNO2
Ensembl hg19 (Hinxton)ENSG00000064932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064932 [Gene_View]  ENSG00000064932 [Sequence]  chr19:1107638-1174268 [Contig_View]  SBNO2 [Vega]
ICGC DataPortalENSG00000064932
TCGA cBioPortalSBNO2
AceView (NCBI)SBNO2
Genatlas (Paris)SBNO2
SOURCE (Princeton)SBNO2
Genetics Home Reference (NIH)SBNO2
Genomic and cartography
GoldenPath hg38 (UCSC)SBNO2  -     chr19:1107638-1174268 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SBNO2  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathSBNO2 - 19p13.3 [CytoView hg19]  SBNO2 - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000064932
Genome Data Viewer NCBISBNO2 [Mapview hg19]  
OMIM615729   
Gene and transcription
Genbank (Entrez)AB023180 AI433817 AK074102 AK125139 AK292407
RefSeq transcript (Entrez)NM_001100122 NM_014963
Consensus coding sequences : CCDS (NCBI)SBNO2
Gene ExpressionSBNO2 [ NCBI-GEO ]   SBNO2 [ EBI - ARRAY_EXPRESS ]   SBNO2 [ SEEK ]   SBNO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SBNO2 [ Firebrowse - Broad ]
GenevisibleExpression of SBNO2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22904
GTEX Portal (Tissue expression)SBNO2
Human Protein AtlasENSG00000064932-SBNO2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2G9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2G9
PhosPhoSitePlusQ9Y2G9
Domains : Interpro (EBI)P-loop_NTPase    SBNO2    SBNO_Helicase_C_dom    SNO    SNO_AAA   
Domain families : Pfam (Sanger)AAA_34 (PF13872)    Helicase_C_4 (PF13871)   
Domain families : Pfam (NCBI)pfam13872    pfam13871   
Conserved Domain (NCBI)SBNO2
SuperfamilyQ9Y2G9
AlphaFold pdb e-kbQ9Y2G9   
Human Protein Atlas [tissue]ENSG00000064932-SBNO2 [tissue]
HPRD17203
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2G9
IntAct (EBI)Q9Y2G9
BioGRIDSBNO2
STRING (EMBL)SBNO2
ZODIACSBNO2
Ontologies - Pathways
QuickGOQ9Y2G9
Ontology : AmiGOmacrophage activation involved in immune response  macrophage activation involved in immune response  cellular_component  nucleus  regulation of transcription, DNA-templated  bone mineralization  osteoclast differentiation  chromatin DNA binding  histone binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  regulation of inflammatory response  regulation of inflammatory response  bone trabecula morphogenesis  cellular response to lipopolysaccharide  cellular response to interleukin-11  cellular response to interleukin-6  cellular response to interleukin-6  osteoclast fusion  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBImacrophage activation involved in immune response  macrophage activation involved in immune response  cellular_component  nucleus  regulation of transcription, DNA-templated  bone mineralization  osteoclast differentiation  chromatin DNA binding  histone binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  regulation of inflammatory response  regulation of inflammatory response  bone trabecula morphogenesis  cellular response to lipopolysaccharide  cellular response to interleukin-11  cellular response to interleukin-6  cellular response to interleukin-6  osteoclast fusion  cellular response to leukemia inhibitory factor  
NDEx NetworkSBNO2
Atlas of Cancer Signalling NetworkSBNO2
Wikipedia pathwaysSBNO2
Orthology - Evolution
OrthoDB22904
GeneTree (enSembl)ENSG00000064932
Phylogenetic Trees/Animal Genes : TreeFamSBNO2
Homologs : HomoloGeneSBNO2
Homology/Alignments : Family Browser (UCSC)SBNO2
Gene fusions - Rearrangements
Fusion : MitelmanC19orf26/19p13.3 [SBNO2/del(19)(p13p13)]  
Fusion : MitelmanFIP1L1/SBNO2 [4q12/19p13.3]  
Fusion : MitelmanMIDN/SBNO2 [19p13.3/19p13.3]  
Fusion : MitelmanSBNO2/ADARB1 [19p13.3/21q22.3]  
Fusion : MitelmanSBNO2/C19orf26 [19p13.3/t(19;19)(p13;p13)]  
Fusion : MitelmanSBNO2/PIAS4 [19p13.3/19p13.3]  
Fusion : MitelmanSBNO2/SERINC2 [19p13.3/1p35.2]  
Fusion : MitelmanSBNO2/TPGS1 [19p13.3/19p13.3]  
Fusion : QuiverSBNO2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSBNO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SBNO2
dbVarSBNO2
ClinVarSBNO2
MonarchSBNO2
1000_GenomesSBNO2 
Exome Variant ServerSBNO2
GNOMAD BrowserENSG00000064932
Varsome BrowserSBNO2
ACMGSBNO2 variants
VarityQ9Y2G9
Genomic Variants (DGV)SBNO2 [DGVbeta]
DECIPHERSBNO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSBNO2 
Mutations
ICGC Data PortalSBNO2 
TCGA Data PortalSBNO2 
Broad Tumor PortalSBNO2
OASIS PortalSBNO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSBNO2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSBNO2
Mutations and Diseases : HGMDSBNO2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSBNO2
DgiDB (Drug Gene Interaction Database)SBNO2
DoCM (Curated mutations)SBNO2
CIViC (Clinical Interpretations of Variants in Cancer)SBNO2
Cancer3DSBNO2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615729   
Orphanet
DisGeNETSBNO2
MedgenSBNO2
Genetic Testing Registry SBNO2
NextProtQ9Y2G9 [Medical]
GENETestsSBNO2
Target ValidationSBNO2
Huge Navigator SBNO2 [HugePedia]
ClinGenSBNO2
Clinical trials, drugs, therapy
MyCancerGenomeSBNO2
Protein Interactions : CTDSBNO2
Pharm GKB GenePA162402390
PharosQ9Y2G9
Clinical trialSBNO2
Miscellaneous
canSAR (ICR)SBNO2
HarmonizomeSBNO2
DataMed IndexSBNO2
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSBNO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:30:07 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.