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SBNO2 (strawberry notch homolog 2)

Identity

Alias_namesKIAA0963
KIAA0963
strawberry notch homolog 2 (Drosophila)
Alias_symbol (synonym)FLJ00173
Stno
Sno
Other aliasSNO
STNO
HGNC (Hugo) SBNO2
LocusID (NCBI) 22904
Atlas_Id 54600
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1107634 and ends at 1132274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CBARP (19p13.3) / SBNO2 (19p13.3)FIP1L1 (4q12) / SBNO2 (19p13.3)MIDN (19p13.3) / SBNO2 (19p13.3)
SBNO2 (19p13.3) / ADARB1 (21q22.3)SBNO2 (19p13.3) / CBARP (19p13.3)SBNO2 (19p13.3) / MGC16121 ()
SBNO2 (19p13.3) / PIAS4 (19p13.3)SBNO2 (19p13.3) / SERINC2 (1p35.2)SBNO2 (19p13.3) / SMCP (1q21.3)
SBNO2 (19p13.3) / TPGS1 (19p13.3)TMEM259 (19p13.3) / SBNO2 (19p13.3)FIP1L1 4q12 / SBNO2 19p13.3
SBNO2 19p13.3 / ADARB1 21q22.3SBNO2 19p13.3 C19orf20SBNO2 19p13.3 C19orf26
SBNO2 19p13.3 / PIAS4 19p13.3SBNO2 19p13.3 / SERINC2 1p35.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

OASIS Portal
Nomenclature
HGNC (Hugo)SBNO2   29158
Cards
Entrez_Gene (NCBI)SBNO2  22904  strawberry notch homolog 2
AliasesKIAA0963; SNO; STNO
GeneCards (Weizmann)SBNO2
Ensembl hg19 (Hinxton)ENSG00000064932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064932 [Gene_View]  chr19:1107634-1132274 [Contig_View]  SBNO2 [Vega]
ICGC DataPortalENSG00000064932
TCGA cBioPortalSBNO2
AceView (NCBI)SBNO2
Genatlas (Paris)SBNO2
WikiGenes22904
SOURCE (Princeton)SBNO2
Genetics Home Reference (NIH)SBNO2
Genomic and cartography
GoldenPath hg38 (UCSC)SBNO2  -     chr19:1107634-1132274 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SBNO2  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSBNO2 - 19p13.3 [CytoView hg19]  SBNO2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISBNO2 [Mapview hg19]  SBNO2 [Mapview hg38]
OMIM615729   
Gene and transcription
Genbank (Entrez)AB023180 AI433817 AK074102 AK125139 AK292407
RefSeq transcript (Entrez)NM_001100122 NM_014963
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_187621
Consensus coding sequences : CCDS (NCBI)SBNO2
Cluster EST : UnigeneHs.408708 [ NCBI ]
CGAP (NCI)Hs.408708
Alternative Splicing GalleryENSG00000064932
Gene ExpressionSBNO2 [ NCBI-GEO ]   SBNO2 [ EBI - ARRAY_EXPRESS ]   SBNO2 [ SEEK ]   SBNO2 [ MEM ]
Gene Expression Viewer (FireBrowse)SBNO2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22904
GTEX Portal (Tissue expression)SBNO2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2G9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2G9
Splice isoforms : SwissVarQ9Y2G9
PhosPhoSitePlusQ9Y2G9
Domains : Interpro (EBI)P-loop_NTPase    SBNO2    SBNO_Helicase_C_dom    SNO   
Domain families : Pfam (Sanger)Helicase_C_4 (PF13871)   
Domain families : Pfam (NCBI)pfam13871   
Conserved Domain (NCBI)SBNO2
DMDM Disease mutations22904
Blocks (Seattle)SBNO2
SuperfamilyQ9Y2G9
Human Protein AtlasENSG00000064932
Peptide AtlasQ9Y2G9
HPRD17203
IPIIPI00158514   IPI00024900   IPI00878948   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2G9
IntAct (EBI)Q9Y2G9
FunCoupENSG00000064932
BioGRIDSBNO2
STRING (EMBL)SBNO2
ZODIACSBNO2
Ontologies - Pathways
QuickGOQ9Y2G9
Ontology : AmiGOossification  macrophage activation involved in immune response  cellular_component  transcription, DNA-templated  cell differentiation  negative regulation of transcription, DNA-templated  regulation of inflammatory response  cellular response to lipopolysaccharide  cellular response to interleukin-11  cellular response to interleukin-6  cellular response to leukemia inhibitory factor  
Ontology : EGO-EBIossification  macrophage activation involved in immune response  cellular_component  transcription, DNA-templated  cell differentiation  negative regulation of transcription, DNA-templated  regulation of inflammatory response  cellular response to lipopolysaccharide  cellular response to interleukin-11  cellular response to interleukin-6  cellular response to leukemia inhibitory factor  
NDEx NetworkSBNO2
Atlas of Cancer Signalling NetworkSBNO2
Wikipedia pathwaysSBNO2
Orthology - Evolution
OrthoDB22904
GeneTree (enSembl)ENSG00000064932
Phylogenetic Trees/Animal Genes : TreeFamSBNO2
HOVERGENQ9Y2G9
HOGENOMQ9Y2G9
Homologs : HomoloGeneSBNO2
Homology/Alignments : Family Browser (UCSC)SBNO2
Gene fusions - Rearrangements
Fusion : MitelmanC19orf26/19p13.3 [SBNO2/del(19)(p13p13)]  
Fusion : MitelmanFIP1L1/SBNO2 [4q12/19p13.3]  [t(4;19)(q12;p13)]  
Fusion : MitelmanMIDN/SBNO2 [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion : MitelmanSBNO2/ADARB1 [19p13.3/21q22.3]  [t(19;21)(p13;q22)]  
Fusion : MitelmanSBNO2/C19orf26 [19p13.3/t(19;19)(p13;p13)]  
Fusion : MitelmanSBNO2/PIAS4 [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion : MitelmanSBNO2/SERINC2 [19p13.3/1p35.2]  [t(1;19)(p35;p13)]  
Fusion : MitelmanSBNO2/TPGS1 [19p13.3/19p13.3]  [t(19;19)(p13;p13)]  
Fusion: TCGAFIP1L1 4q12 SBNO2 19p13.3 BRCA
Fusion: TCGASBNO2 19p13.3 ADARB1 21q22.3 BRCA
Fusion: TCGASBNO2 19p13.3 C19orf20 BRCA
Fusion: TCGASBNO2 19p13.3 C19orf26 BRCA
Fusion: TCGASBNO2 19p13.3 PIAS4 19p13.3 OV
Fusion: TCGASBNO2 19p13.3 SERINC2 1p35.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSBNO2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SBNO2
dbVarSBNO2
ClinVarSBNO2
1000_GenomesSBNO2 
Exome Variant ServerSBNO2
ExAC (Exome Aggregation Consortium)SBNO2 (select the gene name)
Genetic variants : HAPMAP22904
Genomic Variants (DGV)SBNO2 [DGVbeta]
DECIPHERSBNO2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSBNO2 
Mutations
ICGC Data PortalSBNO2 
TCGA Data PortalSBNO2 
Broad Tumor PortalSBNO2
SBNO2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSBNO2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSBNO2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SBNO2
DgiDB (Drug Gene Interaction Database)SBNO2
DoCM (Curated mutations)SBNO2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SBNO2 (select a term)
intoGenSBNO2
Cancer3DSBNO2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615729   
Orphanet
MedgenSBNO2
Genetic Testing Registry SBNO2
NextProtQ9Y2G9 [Medical]
TSGene22904
GENETestsSBNO2
Target ValidationSBNO2
Huge Navigator SBNO2 [HugePedia]
snp3D : Map Gene to Disease22904
BioCentury BCIQSBNO2
ClinGenSBNO2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22904
Chemical/Pharm GKB GenePA162402390
Clinical trialSBNO2
Miscellaneous
canSAR (ICR)SBNO2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSBNO2
EVEXSBNO2
GoPubMedSBNO2
iHOPSBNO2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:30:01 CEST 2017

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