Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SBSN (suprabasin)

Identity

Alias_symbol (synonym)UNQ698
HLAR698
Other alias
HGNC (Hugo) SBSN
LocusID (NCBI) 374897
Atlas_Id 53294
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36014269 and ends at 36019253 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CNKSR3 (6q25.2) / SBSN (19q13.12)SBSN (19q13.12) / GSPT2 (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SBSN   24950
Cards
Entrez_Gene (NCBI)SBSN  374897  suprabasin
AliasesUNQ698
GeneCards (Weizmann)SBSN
Ensembl hg19 (Hinxton)ENSG00000189001 [Gene_View]  chr19:36014269-36019253 [Contig_View]  SBSN [Vega]
Ensembl hg38 (Hinxton)ENSG00000189001 [Gene_View]  chr19:36014269-36019253 [Contig_View]  SBSN [Vega]
ICGC DataPortalENSG00000189001
TCGA cBioPortalSBSN
AceView (NCBI)SBSN
Genatlas (Paris)SBSN
WikiGenes374897
SOURCE (Princeton)SBSN
Genetics Home Reference (NIH)SBSN
Genomic and cartography
GoldenPath hg19 (UCSC)SBSN  -     chr19:36014269-36019253 -  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SBSN  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblSBSN - 19q13.12 [CytoView hg19]  SBSN - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBISBSN [Mapview hg19]  SBSN [Mapview hg38]
OMIM609969   
Gene and transcription
Genbank (Entrez)AA055367 AK291305 AY358701 BC063640 BF838582
RefSeq transcript (Entrez)NM_001166034 NM_001166035 NM_198538
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)SBSN
Cluster EST : UnigeneHs.433484 [ NCBI ]
CGAP (NCI)Hs.433484
Alternative Splicing GalleryENSG00000189001
Gene ExpressionSBSN [ NCBI-GEO ]   SBSN [ EBI - ARRAY_EXPRESS ]   SBSN [ SEEK ]   SBSN [ MEM ]
Gene Expression Viewer (FireBrowse)SBSN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374897
GTEX Portal (Tissue expression)SBSN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWP8
Splice isoforms : SwissVarQ6UWP8
PhosPhoSitePlusQ6UWP8
Domains : Interpro (EBI)Suprabasin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SBSN
DMDM Disease mutations374897
Blocks (Seattle)SBSN
SuperfamilyQ6UWP8
Human Protein AtlasENSG00000189001
Peptide AtlasQ6UWP8
HPRD18498
IPIIPI00373937   IPI00945318   IPI00947285   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWP8
IntAct (EBI)Q6UWP8
FunCoupENSG00000189001
BioGRIDSBSN
STRING (EMBL)SBSN
ZODIACSBSN
Ontologies - Pathways
QuickGOQ6UWP8
Ontology : AmiGOmolecular_function  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  biological_process  extracellular exosome  
NDEx NetworkSBSN
Atlas of Cancer Signalling NetworkSBSN
Wikipedia pathwaysSBSN
Orthology - Evolution
OrthoDB374897
GeneTree (enSembl)ENSG00000189001
Phylogenetic Trees/Animal Genes : TreeFamSBSN
HOVERGENQ6UWP8
HOGENOMQ6UWP8
Homologs : HomoloGeneSBSN
Homology/Alignments : Family Browser (UCSC)SBSN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSBSN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SBSN
dbVarSBSN
ClinVarSBSN
1000_GenomesSBSN 
Exome Variant ServerSBSN
ExAC (Exome Aggregation Consortium)SBSN (select the gene name)
Genetic variants : HAPMAP374897
Genomic Variants (DGV)SBSN [DGVbeta]
DECIPHER (Syndromes)19:36014269-36019253  ENSG00000189001
CONAN: Copy Number AnalysisSBSN 
Mutations
ICGC Data PortalSBSN 
TCGA Data PortalSBSN 
Broad Tumor PortalSBSN
OASIS PortalSBSN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSBSN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSBSN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SBSN
DgiDB (Drug Gene Interaction Database)SBSN
DoCM (Curated mutations)SBSN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SBSN (select a term)
intoGenSBSN
Cancer3DSBSN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609969   
Orphanet
MedgenSBSN
Genetic Testing Registry SBSN
NextProtQ6UWP8 [Medical]
TSGene374897
GENETestsSBSN
Huge Navigator SBSN [HugePedia]
snp3D : Map Gene to Disease374897
BioCentury BCIQSBSN
ClinGenSBSN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD374897
Chemical/Pharm GKB GenePA144596385
Clinical trialSBSN
Miscellaneous
canSAR (ICR)SBSN (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSBSN
EVEXSBSN
GoPubMedSBSN
iHOPSBSN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:26:14 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.