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SBSPON (somatomedin B and thrombospondin, type 1 domain containing)

Identity

Alias_namesC8orf84
chromosome 8 open reading frame 84
Alias_symbol (synonym)RPESP
Other alias
HGNC (Hugo) SBSPON
LocusID (NCBI) 157869
Atlas_Id 72993
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 73976778 and ends at 74005507 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PTPRU (1p35.3) / SBSPON (8q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SBSPON   30362
Cards
Entrez_Gene (NCBI)SBSPON  157869  somatomedin B and thrombospondin, type 1 domain containing
AliasesC8orf84; RPESP
GeneCards (Weizmann)SBSPON
Ensembl hg19 (Hinxton)ENSG00000164764 [Gene_View]  chr8:73976778-74005507 [Contig_View]  SBSPON [Vega]
Ensembl hg38 (Hinxton)ENSG00000164764 [Gene_View]  chr8:73976778-74005507 [Contig_View]  SBSPON [Vega]
ICGC DataPortalENSG00000164764
TCGA cBioPortalSBSPON
AceView (NCBI)SBSPON
Genatlas (Paris)SBSPON
WikiGenes157869
SOURCE (Princeton)SBSPON
Genetics Home Reference (NIH)SBSPON
Genomic and cartography
GoldenPath hg19 (UCSC)SBSPON  -     chr8:73976778-74005507 -  8q21.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SBSPON  -     8q21.11   [Description]    (hg38-Dec_2013)
EnsemblSBSPON - 8q21.11 [CytoView hg19]  SBSPON - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBISBSPON [Mapview hg19]  SBSPON [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF087977 AI698180 AK292970 AL080094 AY040546
RefSeq transcript (Entrez)NM_153225
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008183 NW_004929339
Consensus coding sequences : CCDS (NCBI)SBSPON
Cluster EST : UnigeneHs.439040 [ NCBI ]
CGAP (NCI)Hs.439040
Alternative Splicing GalleryENSG00000164764
Gene ExpressionSBSPON [ NCBI-GEO ]   SBSPON [ EBI - ARRAY_EXPRESS ]   SBSPON [ SEEK ]   SBSPON [ MEM ]
Gene Expression Viewer (FireBrowse)SBSPON [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157869
GTEX Portal (Tissue expression)SBSPON
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVN8
Splice isoforms : SwissVarQ8IVN8
PhosPhoSitePlusQ8IVN8
Domaine pattern : Prosite (Expaxy)SMB_1 (PS00524)    SMB_2 (PS50958)    TSP1 (PS50092)   
Domains : Interpro (EBI)Somatomedin_B_dom    Thrombospondin_1_rpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TSP1 (SM00209)  
Conserved Domain (NCBI)SBSPON
DMDM Disease mutations157869
Blocks (Seattle)SBSPON
SuperfamilyQ8IVN8
Human Protein AtlasENSG00000164764
Peptide AtlasQ8IVN8
HPRD15271
IPIIPI00063877   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVN8
IntAct (EBI)Q8IVN8
FunCoupENSG00000164764
BioGRIDSBSPON
STRING (EMBL)SBSPON
ZODIACSBSPON
Ontologies - Pathways
QuickGOQ8IVN8
Ontology : AmiGOscavenger receptor activity  proteinaceous extracellular matrix  receptor-mediated endocytosis  immune response  polysaccharide binding  extracellular matrix  
Ontology : EGO-EBIscavenger receptor activity  proteinaceous extracellular matrix  receptor-mediated endocytosis  immune response  polysaccharide binding  extracellular matrix  
NDEx NetworkSBSPON
Atlas of Cancer Signalling NetworkSBSPON
Wikipedia pathwaysSBSPON
Orthology - Evolution
OrthoDB157869
GeneTree (enSembl)ENSG00000164764
Phylogenetic Trees/Animal Genes : TreeFamSBSPON
HOVERGENQ8IVN8
HOGENOMQ8IVN8
Homologs : HomoloGeneSBSPON
Homology/Alignments : Family Browser (UCSC)SBSPON
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSBSPON [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SBSPON
dbVarSBSPON
ClinVarSBSPON
1000_GenomesSBSPON 
Exome Variant ServerSBSPON
ExAC (Exome Aggregation Consortium)SBSPON (select the gene name)
Genetic variants : HAPMAP157869
Genomic Variants (DGV)SBSPON [DGVbeta]
DECIPHER (Syndromes)8:73976778-74005507  ENSG00000164764
CONAN: Copy Number AnalysisSBSPON 
Mutations
ICGC Data PortalSBSPON 
TCGA Data PortalSBSPON 
Broad Tumor PortalSBSPON
OASIS PortalSBSPON [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSBSPON
BioMutasearch SBSPON
DgiDB (Drug Gene Interaction Database)SBSPON
DoCM (Curated mutations)SBSPON (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SBSPON (select a term)
intoGenSBSPON
Cancer3DSBSPON(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSBSPON
Genetic Testing Registry SBSPON
NextProtQ8IVN8 [Medical]
TSGene157869
GENETestsSBSPON
Huge Navigator SBSPON [HugePedia]
snp3D : Map Gene to Disease157869
BioCentury BCIQSBSPON
ClinGenSBSPON
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157869
Chemical/Pharm GKB GenePA164717487
Clinical trialSBSPON
Miscellaneous
canSAR (ICR)SBSPON (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSBSPON
EVEXSBSPON
GoPubMedSBSPON
iHOPSBSPON
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:42:21 CET 2017

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