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SBSPON (somatomedin B and thrombospondin type 1 domain containing)

Identity

Alias (NCBI)C8orf84
RPESP
HGNC (Hugo) SBSPON
HGNC Alias symbRPESP
HGNC Alias nameRPE spondin
 rpe-spondin
HGNC Previous nameC8orf84
HGNC Previous namechromosome 8 open reading frame 84
LocusID (NCBI) 157869
Atlas_Id 72993
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 73064543 and ends at 73093172 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PTPRU (1p35.3) / SBSPON (8q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SBSPON   30362
Cards
Entrez_Gene (NCBI)SBSPON    somatomedin B and thrombospondin type 1 domain containing
AliasesC8orf84; RPESP
GeneCards (Weizmann)SBSPON
Ensembl hg19 (Hinxton)ENSG00000164764 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164764 [Gene_View]  ENSG00000164764 [Sequence]  chr8:73064543-73093172 [Contig_View]  SBSPON [Vega]
ICGC DataPortalENSG00000164764
TCGA cBioPortalSBSPON
AceView (NCBI)SBSPON
Genatlas (Paris)SBSPON
SOURCE (Princeton)SBSPON
Genetics Home Reference (NIH)SBSPON
Genomic and cartography
GoldenPath hg38 (UCSC)SBSPON  -     chr8:73064543-73093172 -  8q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SBSPON  -     8q21.11   [Description]    (hg19-Feb_2009)
GoldenPathSBSPON - 8q21.11 [CytoView hg19]  SBSPON - 8q21.11 [CytoView hg38]
ImmunoBaseENSG00000164764
Genome Data Viewer NCBISBSPON [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF087977 AI698180 AK292970 AL080094 AY040546
RefSeq transcript (Entrez)NM_153225
Consensus coding sequences : CCDS (NCBI)SBSPON
Gene ExpressionSBSPON [ NCBI-GEO ]   SBSPON [ EBI - ARRAY_EXPRESS ]   SBSPON [ SEEK ]   SBSPON [ MEM ]
Gene Expression Viewer (FireBrowse)SBSPON [ Firebrowse - Broad ]
GenevisibleExpression of SBSPON in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)157869
GTEX Portal (Tissue expression)SBSPON
Human Protein AtlasENSG00000164764-SBSPON [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVN8
PhosPhoSitePlusQ8IVN8
Domaine pattern : Prosite (Expaxy)SMB_1 (PS00524)    SMB_2 (PS50958)    TSP1 (PS50092)   
Domains : Interpro (EBI)SBSPO    Somatomedin_B-like_dom_sf    Somatomedin_B_dom    TSP1_rpt    TSP1_rpt_sf    TSP1_spondin_dom   
Domain families : Pfam (Sanger)TSP1_spondin (PF19028)   
Domain families : Pfam (NCBI)pfam19028   
Domain families : Smart (EMBL)TSP1 (SM00209)  
Conserved Domain (NCBI)SBSPON
SuperfamilyQ8IVN8
AlphaFold pdb e-kbQ8IVN8   
Human Protein Atlas [tissue]ENSG00000164764-SBSPON [tissue]
HPRD15271
Protein Interaction databases
DIP (DOE-UCLA)Q8IVN8
IntAct (EBI)Q8IVN8
BioGRIDSBSPON
STRING (EMBL)SBSPON
ZODIACSBSPON
Ontologies - Pathways
QuickGOQ8IVN8
Ontology : AmiGOextracellular matrix structural constituent  extracellular region  collagen-containing extracellular matrix  collagen-containing extracellular matrix  
Ontology : EGO-EBIextracellular matrix structural constituent  extracellular region  collagen-containing extracellular matrix  collagen-containing extracellular matrix  
NDEx NetworkSBSPON
Atlas of Cancer Signalling NetworkSBSPON
Wikipedia pathwaysSBSPON
Orthology - Evolution
OrthoDB157869
GeneTree (enSembl)ENSG00000164764
Phylogenetic Trees/Animal Genes : TreeFamSBSPON
Homologs : HomoloGeneSBSPON
Homology/Alignments : Family Browser (UCSC)SBSPON
Gene fusions - Rearrangements
Fusion : QuiverSBSPON
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSBSPON [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SBSPON
dbVarSBSPON
ClinVarSBSPON
MonarchSBSPON
1000_GenomesSBSPON 
Exome Variant ServerSBSPON
GNOMAD BrowserENSG00000164764
Varsome BrowserSBSPON
ACMGSBSPON variants
VarityQ8IVN8
Genomic Variants (DGV)SBSPON [DGVbeta]
DECIPHERSBSPON [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSBSPON 
Mutations
ICGC Data PortalSBSPON 
TCGA Data PortalSBSPON 
Broad Tumor PortalSBSPON
OASIS PortalSBSPON [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSBSPON  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSBSPON
Mutations and Diseases : HGMDSBSPON
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSBSPON
DgiDB (Drug Gene Interaction Database)SBSPON
DoCM (Curated mutations)SBSPON
CIViC (Clinical Interpretations of Variants in Cancer)SBSPON
Cancer3DSBSPON
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSBSPON
MedgenSBSPON
Genetic Testing Registry SBSPON
NextProtQ8IVN8 [Medical]
GENETestsSBSPON
Target ValidationSBSPON
Huge Navigator SBSPON [HugePedia]
ClinGenSBSPON
Clinical trials, drugs, therapy
MyCancerGenomeSBSPON
Protein Interactions : CTDSBSPON
Pharm GKB GenePA164717487
PharosQ8IVN8
Clinical trialSBSPON
Miscellaneous
canSAR (ICR)SBSPON
HarmonizomeSBSPON
DataMed IndexSBSPON
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSBSPON
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:19:49 CEST 2021

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