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SCAANT1 (SCA7/ATXN7 antisense RNA 1)

Identity

Alias_namesSCA7/ATXN7 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)ATXN7-AS1
Other alias
HGNC (Hugo) SCAANT1
LocusID (NCBI) 100861563
Atlas_Id 78960
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 63911518 and ends at 63911772 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SCAANT1   43718
Cards
Entrez_Gene (NCBI)SCAANT1  100861563  SCA7/ATXN7 antisense RNA 1
AliasesATXN7-AS1
GeneCards (Weizmann)SCAANT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr3:63911518-63911772 [Contig_View]  SCAANT1 [Vega]
TCGA cBioPortalSCAANT1
AceView (NCBI)SCAANT1
Genatlas (Paris)SCAANT1
WikiGenes100861563
SOURCE (Princeton)SCAANT1
Genetics Home Reference (NIH)SCAANT1
Genomic and cartography
GoldenPath hg38 (UCSC)SCAANT1  -     chr3:63911518-63911772 -  3p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAANT1  -     3p14.1   [Description]    (hg19-Feb_2009)
EnsemblSCAANT1 - 3p14.1 [CytoView hg19]  SCAANT1 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBISCAANT1 [Mapview hg19]  SCAANT1 [Mapview hg38]
OMIM614481   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAANT1
Gene ExpressionSCAANT1 [ NCBI-GEO ]   SCAANT1 [ EBI - ARRAY_EXPRESS ]   SCAANT1 [ SEEK ]   SCAANT1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAANT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861563
GTEX Portal (Tissue expression)SCAANT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCAANT1
DMDM Disease mutations100861563
Blocks (Seattle)SCAANT1
Protein Interaction databases
BioGRIDSCAANT1
STRING (EMBL)SCAANT1
ZODIACSCAANT1
Ontologies - Pathways
Huge Navigator SCAANT1 [HugePedia]
snp3D : Map Gene to Disease100861563
BioCentury BCIQSCAANT1
ClinGenSCAANT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861563
Clinical trialSCAANT1
Miscellaneous
canSAR (ICR)SCAANT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAANT1
EVEXSCAANT1
GoPubMedSCAANT1
iHOPSCAANT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:28:07 CEST 2018

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