Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCAI (suppressor of cancer cell invasion)

Identity

Alias_namesC9orf126
chromosome 9 open reading frame 126
Alias_symbol (synonym)FLJ36664
NET40
Other alias
HGNC (Hugo) SCAI
LocusID (NCBI) 286205
Atlas_Id 51042
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 124942609 and ends at 125143559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCAI (9q33.3) / CA8 (8q12.1)SCAI (9q33.3) / PPP6C (9q33.3)SCAI (9q33.3) / PSMB7 (9q33.3)
SCAI (9q33.3) / TOX3 (16q12.1)SCAI 9q33.3 / CA8 8q12.1SCAI 9q33.3 / PPP6C 9q33.3
SCAI 9q33.3 / TOX3 16q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAI   26709
Cards
Entrez_Gene (NCBI)SCAI  286205  suppressor of cancer cell invasion
AliasesC9orf126; NET40
GeneCards (Weizmann)SCAI
Ensembl hg19 (Hinxton)ENSG00000173611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173611 [Gene_View]  chr9:124942609-125143559 [Contig_View]  SCAI [Vega]
ICGC DataPortalENSG00000173611
TCGA cBioPortalSCAI
AceView (NCBI)SCAI
Genatlas (Paris)SCAI
WikiGenes286205
SOURCE (Princeton)SCAI
Genetics Home Reference (NIH)SCAI
Genomic and cartography
GoldenPath hg38 (UCSC)SCAI  -     chr9:124942609-125143559 -  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAI  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblSCAI - 9q33.3 [CytoView hg19]  SCAI - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBISCAI [Mapview hg19]  SCAI [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086497 AK021820 AK093983 AK098024 BC029431
RefSeq transcript (Entrez)NM_001144877 NM_173690
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAI
Cluster EST : UnigeneHs.59504 [ NCBI ]
CGAP (NCI)Hs.59504
Alternative Splicing GalleryENSG00000173611
Gene ExpressionSCAI [ NCBI-GEO ]   SCAI [ EBI - ARRAY_EXPRESS ]   SCAI [ SEEK ]   SCAI [ MEM ]
Gene Expression Viewer (FireBrowse)SCAI [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286205
GTEX Portal (Tissue expression)SCAI
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9R8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9R8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9R8
Splice isoforms : SwissVarQ8N9R8
PhosPhoSitePlusQ8N9R8
Domains : Interpro (EBI)SCAI    SCAI_metazoan/Viridiplantae   
Domain families : Pfam (Sanger)SCAI (PF12070)   
Domain families : Pfam (NCBI)pfam12070   
Conserved Domain (NCBI)SCAI
DMDM Disease mutations286205
Blocks (Seattle)SCAI
SuperfamilyQ8N9R8
Human Protein AtlasENSG00000173611
Peptide AtlasQ8N9R8
HPRD12941
IPIIPI00646433   IPI00184376   IPI00946202   IPI00946423   IPI00946608   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9R8
IntAct (EBI)Q8N9R8
FunCoupENSG00000173611
BioGRIDSCAI
STRING (EMBL)SCAI
ZODIACSCAI
Ontologies - Pathways
QuickGOQ8N9R8
Ontology : AmiGOtranscription corepressor activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  integral component of membrane  negative regulation of cell migration  nuclear membrane  negative regulation of Rho protein signal transduction  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBItranscription corepressor activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  integral component of membrane  negative regulation of cell migration  nuclear membrane  negative regulation of Rho protein signal transduction  negative regulation of nucleic acid-templated transcription  
NDEx NetworkSCAI
Atlas of Cancer Signalling NetworkSCAI
Wikipedia pathwaysSCAI
Orthology - Evolution
OrthoDB286205
GeneTree (enSembl)ENSG00000173611
Phylogenetic Trees/Animal Genes : TreeFamSCAI
HOVERGENQ8N9R8
HOGENOMQ8N9R8
Homologs : HomoloGeneSCAI
Homology/Alignments : Family Browser (UCSC)SCAI
Gene fusions - Rearrangements
Fusion : MitelmanSCAI/CA8 [9q33.3/8q12.1]  
Fusion : MitelmanSCAI/PPP6C [9q33.3/9q33.3]  [t(9;9)(q33;q33)]  
Fusion : MitelmanSCAI/TOX3 [9q33.3/16q12.1]  [t(9;16)(q33;q12)]  
Fusion: TCGASCAI 9q33.3 CA8 8q12.1 BRCA
Fusion: TCGASCAI 9q33.3 PPP6C 9q33.3 BRCA
Fusion: TCGASCAI 9q33.3 TOX3 16q12.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAI [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAI
dbVarSCAI
ClinVarSCAI
1000_GenomesSCAI 
Exome Variant ServerSCAI
ExAC (Exome Aggregation Consortium)SCAI (select the gene name)
Genetic variants : HAPMAP286205
Genomic Variants (DGV)SCAI [DGVbeta]
DECIPHERSCAI [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAI 
Mutations
ICGC Data PortalSCAI 
TCGA Data PortalSCAI 
Broad Tumor PortalSCAI
OASIS PortalSCAI [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAI  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCAI
intOGen PortalSCAI
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAI
DgiDB (Drug Gene Interaction Database)SCAI
DoCM (Curated mutations)SCAI (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAI (select a term)
intoGenSCAI
Cancer3DSCAI(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSCAI
Genetic Testing Registry SCAI
NextProtQ8N9R8 [Medical]
TSGene286205
GENETestsSCAI
Huge Navigator SCAI [HugePedia]
snp3D : Map Gene to Disease286205
BioCentury BCIQSCAI
ClinGenSCAI
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286205
Chemical/Pharm GKB GenePA165586233
Clinical trialSCAI
Miscellaneous
canSAR (ICR)SCAI (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAI
EVEXSCAI
GoPubMedSCAI
iHOPSCAI
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:36:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.