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SCAMP1 (secretory carrier membrane protein 1)

Identity

Alias_symbol (synonym)SCAMP37
Other aliasSCAMP
HGNC (Hugo) SCAMP1
LocusID (NCBI) 9522
Atlas_Id 53744
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 78360503 and ends at 78480739 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAMP1   10563
Cards
Entrez_Gene (NCBI)SCAMP1  9522  secretory carrier membrane protein 1
AliasesSCAMP; SCAMP37
GeneCards (Weizmann)SCAMP1
Ensembl hg19 (Hinxton)ENSG00000085365 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085365 [Gene_View]  chr5:78360503-78480739 [Contig_View]  SCAMP1 [Vega]
ICGC DataPortalENSG00000085365
TCGA cBioPortalSCAMP1
AceView (NCBI)SCAMP1
Genatlas (Paris)SCAMP1
WikiGenes9522
SOURCE (Princeton)SCAMP1
Genetics Home Reference (NIH)SCAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)SCAMP1  -     chr5:78360503-78480739 +  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAMP1  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblSCAMP1 - 5q14.1 [CytoView hg19]  SCAMP1 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBISCAMP1 [Mapview hg19]  SCAMP1 [Mapview hg38]
OMIM606911   
Gene and transcription
Genbank (Entrez)AF005037 AF038966 AF131858 AK001417 AK001541
RefSeq transcript (Entrez)NM_001290229 NM_004866 NM_052822
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAMP1
Cluster EST : UnigeneHs.482587 [ NCBI ]
CGAP (NCI)Hs.482587
Alternative Splicing GalleryENSG00000085365
Gene ExpressionSCAMP1 [ NCBI-GEO ]   SCAMP1 [ EBI - ARRAY_EXPRESS ]   SCAMP1 [ SEEK ]   SCAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9522
GTEX Portal (Tissue expression)SCAMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15126   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15126  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15126
Splice isoforms : SwissVarO15126
PhosPhoSitePlusO15126
Domains : Interpro (EBI)SCAMP   
Domain families : Pfam (Sanger)SCAMP (PF04144)   
Domain families : Pfam (NCBI)pfam04144   
Conserved Domain (NCBI)SCAMP1
DMDM Disease mutations9522
Blocks (Seattle)SCAMP1
SuperfamilyO15126
Human Protein AtlasENSG00000085365
Peptide AtlasO15126
HPRD06072
IPIIPI00005129   IPI00067352   IPI00059809   
Protein Interaction databases
DIP (DOE-UCLA)O15126
IntAct (EBI)O15126
FunCoupENSG00000085365
BioGRIDSCAMP1
STRING (EMBL)SCAMP1
ZODIACSCAMP1
Ontologies - Pathways
QuickGOO15126
Ontology : AmiGOprotein binding  trans-Golgi network  plasma membrane  post-Golgi vesicle-mediated transport  protein transport  integral component of membrane  clathrin-coated vesicle  synaptic vesicle membrane  specific granule membrane  zymogen granule membrane  neutrophil degranulation  recycling endosome membrane  
Ontology : EGO-EBIprotein binding  trans-Golgi network  plasma membrane  post-Golgi vesicle-mediated transport  protein transport  integral component of membrane  clathrin-coated vesicle  synaptic vesicle membrane  specific granule membrane  zymogen granule membrane  neutrophil degranulation  recycling endosome membrane  
NDEx NetworkSCAMP1
Atlas of Cancer Signalling NetworkSCAMP1
Wikipedia pathwaysSCAMP1
Orthology - Evolution
OrthoDB9522
GeneTree (enSembl)ENSG00000085365
Phylogenetic Trees/Animal Genes : TreeFamSCAMP1
HOVERGENO15126
HOGENOMO15126
Homologs : HomoloGeneSCAMP1
Homology/Alignments : Family Browser (UCSC)SCAMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAMP1
dbVarSCAMP1
ClinVarSCAMP1
1000_GenomesSCAMP1 
Exome Variant ServerSCAMP1
ExAC (Exome Aggregation Consortium)SCAMP1 (select the gene name)
Genetic variants : HAPMAP9522
Genomic Variants (DGV)SCAMP1 [DGVbeta]
DECIPHERSCAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAMP1 
Mutations
ICGC Data PortalSCAMP1 
TCGA Data PortalSCAMP1 
Broad Tumor PortalSCAMP1
OASIS PortalSCAMP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSCAMP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAMP1
DgiDB (Drug Gene Interaction Database)SCAMP1
DoCM (Curated mutations)SCAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAMP1 (select a term)
intoGenSCAMP1
Cancer3DSCAMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606911   
Orphanet
MedgenSCAMP1
Genetic Testing Registry SCAMP1
NextProtO15126 [Medical]
TSGene9522
GENETestsSCAMP1
Target ValidationSCAMP1
Huge Navigator SCAMP1 [HugePedia]
snp3D : Map Gene to Disease9522
BioCentury BCIQSCAMP1
ClinGenSCAMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9522
Chemical/Pharm GKB GenePA34976
Clinical trialSCAMP1
Miscellaneous
canSAR (ICR)SCAMP1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAMP1
EVEXSCAMP1
GoPubMedSCAMP1
iHOPSCAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:30:02 CEST 2017

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