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SCAMP2 (secretory carrier membrane protein 2)

Identity

Other alias-
HGNC (Hugo) SCAMP2
LocusID (NCBI) 10066
Atlas_Id 54602
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 75137197 and ends at 75165670 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C3 (19p13.3) / SCAMP2 (15q24.1)PPCDC (15q24.2) / SCAMP2 (15q24.1)PSG9 (19q13.31) / SCAMP2 (15q24.1)
SCAMP2 (15q24.1) / CSNK1D (17q25.3)SCAMP2 (15q24.1) / SLC12A8 (3q21.2)SCAMP2 (15q24.1) / WDR72 (15q21.3)
PPCDC 15q24.2 / SCAMP2 15q24.1SCAMP2 15q24.1 / SLC12A8 3q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAMP2   10564
Cards
Entrez_Gene (NCBI)SCAMP2  10066  secretory carrier membrane protein 2
Aliases
GeneCards (Weizmann)SCAMP2
Ensembl hg19 (Hinxton)ENSG00000140497 [Gene_View]  chr15:75137197-75165670 [Contig_View]  SCAMP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140497 [Gene_View]  chr15:75137197-75165670 [Contig_View]  SCAMP2 [Vega]
ICGC DataPortalENSG00000140497
TCGA cBioPortalSCAMP2
AceView (NCBI)SCAMP2
Genatlas (Paris)SCAMP2
WikiGenes10066
SOURCE (Princeton)SCAMP2
Genetics Home Reference (NIH)SCAMP2
Genomic and cartography
GoldenPath hg19 (UCSC)SCAMP2  -     chr15:75137197-75165670 -  15q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCAMP2  -     15q24.1   [Description]    (hg38-Dec_2013)
EnsemblSCAMP2 - 15q24.1 [CytoView hg19]  SCAMP2 - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBISCAMP2 [Mapview hg19]  SCAMP2 [Mapview hg38]
OMIM606912   
Gene and transcription
Genbank (Entrez)AF005038 AK096376 AK096794 AK291884 AK315516
RefSeq transcript (Entrez)NM_001320778 NM_005697
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)SCAMP2
Cluster EST : UnigeneHs.458917 [ NCBI ]
CGAP (NCI)Hs.458917
Alternative Splicing GalleryENSG00000140497
Gene ExpressionSCAMP2 [ NCBI-GEO ]   SCAMP2 [ EBI - ARRAY_EXPRESS ]   SCAMP2 [ SEEK ]   SCAMP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAMP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10066
GTEX Portal (Tissue expression)SCAMP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15127   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15127  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15127
Splice isoforms : SwissVarO15127
PhosPhoSitePlusO15127
Domains : Interpro (EBI)SCAMP   
Domain families : Pfam (Sanger)SCAMP (PF04144)   
Domain families : Pfam (NCBI)pfam04144   
Conserved Domain (NCBI)SCAMP2
DMDM Disease mutations10066
Blocks (Seattle)SCAMP2
SuperfamilyO15127
Human Protein AtlasENSG00000140497
Peptide AtlasO15127
HPRD06073
IPIIPI00218850   IPI00902677   
Protein Interaction databases
DIP (DOE-UCLA)O15127
IntAct (EBI)O15127
FunCoupENSG00000140497
BioGRIDSCAMP2
STRING (EMBL)SCAMP2
ZODIACSCAMP2
Ontologies - Pathways
QuickGOO15127
Ontology : AmiGOprotein binding  nucleoplasm  Golgi apparatus  post-Golgi vesicle-mediated transport  protein transport  integral component of membrane  transport vesicle  trans-Golgi network membrane  intracellular membrane-bounded organelle  recycling endosome membrane  extracellular exosome  
Ontology : EGO-EBIprotein binding  nucleoplasm  Golgi apparatus  post-Golgi vesicle-mediated transport  protein transport  integral component of membrane  transport vesicle  trans-Golgi network membrane  intracellular membrane-bounded organelle  recycling endosome membrane  extracellular exosome  
NDEx NetworkSCAMP2
Atlas of Cancer Signalling NetworkSCAMP2
Wikipedia pathwaysSCAMP2
Orthology - Evolution
OrthoDB10066
GeneTree (enSembl)ENSG00000140497
Phylogenetic Trees/Animal Genes : TreeFamSCAMP2
HOVERGENO15127
HOGENOMO15127
Homologs : HomoloGeneSCAMP2
Homology/Alignments : Family Browser (UCSC)SCAMP2
Gene fusions - Rearrangements
Fusion : MitelmanPPCDC/SCAMP2 [15q24.2/15q24.1]  [t(15;15)(q24;q24)]  
Fusion : MitelmanSCAMP2/SLC12A8 [15q24.1/3q21.2]  [t(3;15)(q21;q24)]  
Fusion : MitelmanSCAMP2/WDR72 [15q24.1/15q21.3]  [t(15;15)(q21;q24)]  
Fusion: TCGAPPCDC 15q24.2 SCAMP2 15q24.1 BRCA
Fusion: TCGASCAMP2 15q24.1 SLC12A8 3q21.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAMP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAMP2
dbVarSCAMP2
ClinVarSCAMP2
1000_GenomesSCAMP2 
Exome Variant ServerSCAMP2
ExAC (Exome Aggregation Consortium)SCAMP2 (select the gene name)
Genetic variants : HAPMAP10066
Genomic Variants (DGV)SCAMP2 [DGVbeta]
DECIPHER (Syndromes)15:75137197-75165670  ENSG00000140497
CONAN: Copy Number AnalysisSCAMP2 
Mutations
ICGC Data PortalSCAMP2 
TCGA Data PortalSCAMP2 
Broad Tumor PortalSCAMP2
OASIS PortalSCAMP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAMP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCAMP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAMP2
DgiDB (Drug Gene Interaction Database)SCAMP2
DoCM (Curated mutations)SCAMP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAMP2 (select a term)
intoGenSCAMP2
Cancer3DSCAMP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606912   
Orphanet
MedgenSCAMP2
Genetic Testing Registry SCAMP2
NextProtO15127 [Medical]
TSGene10066
GENETestsSCAMP2
Huge Navigator SCAMP2 [HugePedia]
snp3D : Map Gene to Disease10066
BioCentury BCIQSCAMP2
ClinGenSCAMP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10066
Chemical/Pharm GKB GenePA34977
Clinical trialSCAMP2
Miscellaneous
canSAR (ICR)SCAMP2 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAMP2
EVEXSCAMP2
GoPubMedSCAMP2
iHOPSCAMP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:18:25 CEST 2017

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