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SCAMP3 (secretory carrier membrane protein 3)

Identity

Alias_namesC1orf3
Other alias
HGNC (Hugo) SCAMP3
LocusID (NCBI) 10067
Atlas_Id 72998
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155225770 and ends at 155232176 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C1orf43 (1q21.3) / SCAMP3 (1q22)GBA (1q22) / SCAMP3 (1q22)SCAMP3 (1q22) / SCAMP3 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAMP3   10565
Cards
Entrez_Gene (NCBI)SCAMP3  10067  secretory carrier membrane protein 3
AliasesC1orf3
GeneCards (Weizmann)SCAMP3
Ensembl hg19 (Hinxton)ENSG00000116521 [Gene_View]  chr1:155225770-155232176 [Contig_View]  SCAMP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000116521 [Gene_View]  chr1:155225770-155232176 [Contig_View]  SCAMP3 [Vega]
ICGC DataPortalENSG00000116521
TCGA cBioPortalSCAMP3
AceView (NCBI)SCAMP3
Genatlas (Paris)SCAMP3
WikiGenes10067
SOURCE (Princeton)SCAMP3
Genetics Home Reference (NIH)SCAMP3
Genomic and cartography
GoldenPath hg19 (UCSC)SCAMP3  -     chr1:155225770-155232176 -  1q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCAMP3  -     1q22   [Description]    (hg38-Dec_2013)
EnsemblSCAMP3 - 1q22 [CytoView hg19]  SCAMP3 - 1q22 [CytoView hg38]
Mapping of homologs : NCBISCAMP3 [Mapview hg19]  SCAMP3 [Mapview hg38]
OMIM606913   
Gene and transcription
Genbank (Entrez)AF005039 BC000161 BC005135 BC010505 BM790077
RefSeq transcript (Entrez)NM_005698 NM_052837
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_003315906 NW_004929293
Consensus coding sequences : CCDS (NCBI)SCAMP3
Cluster EST : UnigeneHs.200600 [ NCBI ]
CGAP (NCI)Hs.200600
Alternative Splicing GalleryENSG00000116521
Gene ExpressionSCAMP3 [ NCBI-GEO ]   SCAMP3 [ EBI - ARRAY_EXPRESS ]   SCAMP3 [ SEEK ]   SCAMP3 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAMP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10067
GTEX Portal (Tissue expression)SCAMP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14828   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14828  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14828
Splice isoforms : SwissVarO14828
PhosPhoSitePlusO14828
Domains : Interpro (EBI)SCAMP   
Domain families : Pfam (Sanger)SCAMP (PF04144)   
Domain families : Pfam (NCBI)pfam04144   
Conserved Domain (NCBI)SCAMP3
DMDM Disease mutations10067
Blocks (Seattle)SCAMP3
SuperfamilyO14828
Human Protein AtlasENSG00000116521
Peptide AtlasO14828
HPRD06074
IPIIPI00306382   IPI00306383   
Protein Interaction databases
DIP (DOE-UCLA)O14828
IntAct (EBI)O14828
FunCoupENSG00000116521
BioGRIDSCAMP3
STRING (EMBL)SCAMP3
ZODIACSCAMP3
Ontologies - Pathways
QuickGOO14828
Ontology : AmiGOGolgi membrane  post-Golgi vesicle-mediated transport  protein transport  integral component of membrane  ubiquitin protein ligase binding  response to retinoic acid  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  post-Golgi vesicle-mediated transport  protein transport  integral component of membrane  ubiquitin protein ligase binding  response to retinoic acid  extracellular exosome  
NDEx NetworkSCAMP3
Atlas of Cancer Signalling NetworkSCAMP3
Wikipedia pathwaysSCAMP3
Orthology - Evolution
OrthoDB10067
GeneTree (enSembl)ENSG00000116521
Phylogenetic Trees/Animal Genes : TreeFamSCAMP3
HOVERGENO14828
HOGENOMO14828
Homologs : HomoloGeneSCAMP3
Homology/Alignments : Family Browser (UCSC)SCAMP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAMP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAMP3
dbVarSCAMP3
ClinVarSCAMP3
1000_GenomesSCAMP3 
Exome Variant ServerSCAMP3
ExAC (Exome Aggregation Consortium)SCAMP3 (select the gene name)
Genetic variants : HAPMAP10067
Genomic Variants (DGV)SCAMP3 [DGVbeta]
DECIPHER (Syndromes)1:155225770-155232176  ENSG00000116521
CONAN: Copy Number AnalysisSCAMP3 
Mutations
ICGC Data PortalSCAMP3 
TCGA Data PortalSCAMP3 
Broad Tumor PortalSCAMP3
OASIS PortalSCAMP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAMP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCAMP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAMP3
DgiDB (Drug Gene Interaction Database)SCAMP3
DoCM (Curated mutations)SCAMP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAMP3 (select a term)
intoGenSCAMP3
Cancer3DSCAMP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606913   
Orphanet
MedgenSCAMP3
Genetic Testing Registry SCAMP3
NextProtO14828 [Medical]
TSGene10067
GENETestsSCAMP3
Huge Navigator SCAMP3 [HugePedia]
snp3D : Map Gene to Disease10067
BioCentury BCIQSCAMP3
ClinGenSCAMP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10067
Chemical/Pharm GKB GenePA34978
Clinical trialSCAMP3
Miscellaneous
canSAR (ICR)SCAMP3 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAMP3
EVEXSCAMP3
GoPubMedSCAMP3
iHOPSCAMP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:42:22 CET 2017

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