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SCAMP3 (secretory carrier membrane protein 3)

Identity

Alias (NCBI)C1orf3
HGNC (Hugo) SCAMP3
HGNC Alias namePropin 1
HGNC Previous nameC1orf3
LocusID (NCBI) 10067
Atlas_Id 56984
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155255981 and ends at 155262360 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C1orf43 (1q21.3) / SCAMP3 (1q22)GBA (1q22) / SCAMP3 (1q22)SCAMP3 (1q22) / SCAMP3 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SCAMP3   10565
Cards
Entrez_Gene (NCBI)SCAMP3    secretory carrier membrane protein 3
AliasesC1orf3
GeneCards (Weizmann)SCAMP3
Ensembl hg19 (Hinxton)ENSG00000116521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116521 [Gene_View]  ENSG00000116521 [Sequence]  chr1:155255981-155262360 [Contig_View]  SCAMP3 [Vega]
ICGC DataPortalENSG00000116521
TCGA cBioPortalSCAMP3
AceView (NCBI)SCAMP3
Genatlas (Paris)SCAMP3
SOURCE (Princeton)SCAMP3
Genetics Home Reference (NIH)SCAMP3
Genomic and cartography
GoldenPath hg38 (UCSC)SCAMP3  -     chr1:155255981-155262360 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAMP3  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathSCAMP3 - 1q22 [CytoView hg19]  SCAMP3 - 1q22 [CytoView hg38]
ImmunoBaseENSG00000116521
Genome Data Viewer NCBISCAMP3 [Mapview hg19]  
OMIM606913   
Gene and transcription
Genbank (Entrez)AF005039 BC000161 BC005135 BC010505 BM790077
RefSeq transcript (Entrez)NM_005698 NM_052837
Consensus coding sequences : CCDS (NCBI)SCAMP3
Gene ExpressionSCAMP3 [ NCBI-GEO ]   SCAMP3 [ EBI - ARRAY_EXPRESS ]   SCAMP3 [ SEEK ]   SCAMP3 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAMP3 [ Firebrowse - Broad ]
GenevisibleExpression of SCAMP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10067
GTEX Portal (Tissue expression)SCAMP3
Human Protein AtlasENSG00000116521-SCAMP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14828   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14828  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14828
PhosPhoSitePlusO14828
Domains : Interpro (EBI)SCAMP   
Domain families : Pfam (Sanger)SCAMP (PF04144)   
Domain families : Pfam (NCBI)pfam04144   
Conserved Domain (NCBI)SCAMP3
SuperfamilyO14828
AlphaFold pdb e-kbO14828   
Human Protein Atlas [tissue]ENSG00000116521-SCAMP3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O14828
IntAct (EBI)O14828
BioGRIDSCAMP3
STRING (EMBL)SCAMP3
ZODIACSCAMP3
Ontologies - Pathways
QuickGOO14828
Ontology : AmiGOpost-Golgi vesicle-mediated transport  protein transport  integral component of membrane  ubiquitin protein ligase binding  trans-Golgi network membrane  intracellular membrane-bounded organelle  recycling endosome membrane  extracellular exosome  
Ontology : EGO-EBIpost-Golgi vesicle-mediated transport  protein transport  integral component of membrane  ubiquitin protein ligase binding  trans-Golgi network membrane  intracellular membrane-bounded organelle  recycling endosome membrane  extracellular exosome  
NDEx NetworkSCAMP3
Atlas of Cancer Signalling NetworkSCAMP3
Wikipedia pathwaysSCAMP3
Orthology - Evolution
OrthoDB10067
GeneTree (enSembl)ENSG00000116521
Phylogenetic Trees/Animal Genes : TreeFamSCAMP3
Homologs : HomoloGeneSCAMP3
Homology/Alignments : Family Browser (UCSC)SCAMP3
Gene fusions - Rearrangements
Fusion : QuiverSCAMP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAMP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAMP3
dbVarSCAMP3
ClinVarSCAMP3
MonarchSCAMP3
1000_GenomesSCAMP3 
Exome Variant ServerSCAMP3
GNOMAD BrowserENSG00000116521
Varsome BrowserSCAMP3
ACMGSCAMP3 variants
VarityO14828
Genomic Variants (DGV)SCAMP3 [DGVbeta]
DECIPHERSCAMP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAMP3 
Mutations
ICGC Data PortalSCAMP3 
TCGA Data PortalSCAMP3 
Broad Tumor PortalSCAMP3
OASIS PortalSCAMP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAMP3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSCAMP3
Mutations and Diseases : HGMDSCAMP3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSCAMP3
DgiDB (Drug Gene Interaction Database)SCAMP3
DoCM (Curated mutations)SCAMP3
CIViC (Clinical Interpretations of Variants in Cancer)SCAMP3
Cancer3DSCAMP3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606913   
Orphanet
DisGeNETSCAMP3
MedgenSCAMP3
Genetic Testing Registry SCAMP3
NextProtO14828 [Medical]
GENETestsSCAMP3
Target ValidationSCAMP3
Huge Navigator SCAMP3 [HugePedia]
ClinGenSCAMP3
Clinical trials, drugs, therapy
MyCancerGenomeSCAMP3
Protein Interactions : CTDSCAMP3
Pharm GKB GenePA34978
PharosO14828
Clinical trialSCAMP3
Miscellaneous
canSAR (ICR)SCAMP3
HarmonizomeSCAMP3
DataMed IndexSCAMP3
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSCAMP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:30:09 CEST 2021

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