Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCAMP4 (secretory carrier membrane protein 4)

Identity

Alias_symbol (synonym)FLJ33847
Other aliasSCAMP-4
HGNC (Hugo) SCAMP4
LocusID (NCBI) 113178
Atlas_Id 54603
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1905214 and ends at 1926017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CSNK1G2 (19p13.3) / SCAMP4 (19p13.3)GNG7 (19p13.3) / SCAMP4 (19p13.3)MAGED2 (Xp11.21) / SCAMP4 (19p13.3)
SCAMP4 (19p13.3) / C7orf26 (7p22.1)MAGED2 Xp11.21 / SCAMP4 19p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAMP4   30385
Cards
Entrez_Gene (NCBI)SCAMP4  113178  secretory carrier membrane protein 4
AliasesSCAMP-4
GeneCards (Weizmann)SCAMP4
Ensembl hg19 (Hinxton)ENSG00000227500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227500 [Gene_View]  chr19:1905214-1926017 [Contig_View]  SCAMP4 [Vega]
ICGC DataPortalENSG00000227500
TCGA cBioPortalSCAMP4
AceView (NCBI)SCAMP4
Genatlas (Paris)SCAMP4
WikiGenes113178
SOURCE (Princeton)SCAMP4
Genetics Home Reference (NIH)SCAMP4
Genomic and cartography
GoldenPath hg38 (UCSC)SCAMP4  -     chr19:1905214-1926017 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAMP4  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSCAMP4 - 19p13.3 [CytoView hg19]  SCAMP4 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISCAMP4 [Mapview hg19]  SCAMP4 [Mapview hg38]
OMIM613764   
Gene and transcription
Genbank (Entrez)AF109187 AF173896 AK074586 AK074967 AK091166
RefSeq transcript (Entrez)NM_001329539 NM_001329540 NM_079834
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAMP4
Cluster EST : UnigeneHs.144980 [ NCBI ]
CGAP (NCI)Hs.144980
Alternative Splicing GalleryENSG00000227500
Gene ExpressionSCAMP4 [ NCBI-GEO ]   SCAMP4 [ EBI - ARRAY_EXPRESS ]   SCAMP4 [ SEEK ]   SCAMP4 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAMP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113178
GTEX Portal (Tissue expression)SCAMP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969E2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969E2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969E2
Splice isoforms : SwissVarQ969E2
PhosPhoSitePlusQ969E2
Domains : Interpro (EBI)SCAMP   
Domain families : Pfam (Sanger)SCAMP (PF04144)   
Domain families : Pfam (NCBI)pfam04144   
Conserved Domain (NCBI)SCAMP4
DMDM Disease mutations113178
Blocks (Seattle)SCAMP4
SuperfamilyQ969E2
Human Protein AtlasENSG00000227500
Peptide AtlasQ969E2
HPRD11536
IPIIPI00056310   IPI00472242   IPI00791106   IPI00981210   IPI00916570   IPI01025256   IPI00916723   
Protein Interaction databases
DIP (DOE-UCLA)Q969E2
IntAct (EBI)Q969E2
FunCoupENSG00000227500
BioGRIDSCAMP4
STRING (EMBL)SCAMP4
ZODIACSCAMP4
Ontologies - Pathways
QuickGOQ969E2
Ontology : AmiGOprotein transport  integral component of membrane  
Ontology : EGO-EBIprotein transport  integral component of membrane  
NDEx NetworkSCAMP4
Atlas of Cancer Signalling NetworkSCAMP4
Wikipedia pathwaysSCAMP4
Orthology - Evolution
OrthoDB113178
GeneTree (enSembl)ENSG00000227500
Phylogenetic Trees/Animal Genes : TreeFamSCAMP4
HOVERGENQ969E2
HOGENOMQ969E2
Homologs : HomoloGeneSCAMP4
Homology/Alignments : Family Browser (UCSC)SCAMP4
Gene fusions - Rearrangements
Fusion : MitelmanGNG7/SCAMP4 [19p13.3/19p13.3]  [inv(19)(p13p13)]  
Fusion : MitelmanMAGED2/SCAMP4 [Xp11.21/19p13.3]  [t(X;19)(p11;p13)]  
Fusion: TCGAMAGED2 Xp11.21 SCAMP4 19p13.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAMP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAMP4
dbVarSCAMP4
ClinVarSCAMP4
1000_GenomesSCAMP4 
Exome Variant ServerSCAMP4
ExAC (Exome Aggregation Consortium)SCAMP4 (select the gene name)
Genetic variants : HAPMAP113178
Genomic Variants (DGV)SCAMP4 [DGVbeta]
DECIPHERSCAMP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAMP4 
Mutations
ICGC Data PortalSCAMP4 
TCGA Data PortalSCAMP4 
Broad Tumor PortalSCAMP4
OASIS PortalSCAMP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAMP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCAMP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAMP4
DgiDB (Drug Gene Interaction Database)SCAMP4
DoCM (Curated mutations)SCAMP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAMP4 (select a term)
intoGenSCAMP4
Cancer3DSCAMP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613764   
Orphanet
MedgenSCAMP4
Genetic Testing Registry SCAMP4
NextProtQ969E2 [Medical]
TSGene113178
GENETestsSCAMP4
Target ValidationSCAMP4
Huge Navigator SCAMP4 [HugePedia]
snp3D : Map Gene to Disease113178
BioCentury BCIQSCAMP4
ClinGenSCAMP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113178
Chemical/Pharm GKB GenePA134983341
Clinical trialSCAMP4
Miscellaneous
canSAR (ICR)SCAMP4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAMP4
EVEXSCAMP4
GoPubMedSCAMP4
iHOPSCAMP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:54:28 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.