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SCAMP5 (secretory carrier membrane protein 5)

Identity

Alias_symbol (synonym)MGC24969
Other alias-
HGNC (Hugo) SCAMP5
LocusID (NCBI) 192683
Atlas_Id 72999
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 74995535 and ends at 75021495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SCAMP5 (15q24.2) / KLF4 (9q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAMP5   30386
Cards
Entrez_Gene (NCBI)SCAMP5  192683  secretory carrier membrane protein 5
Aliases
GeneCards (Weizmann)SCAMP5
Ensembl hg19 (Hinxton)ENSG00000198794 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198794 [Gene_View]  chr15:74995535-75021495 [Contig_View]  SCAMP5 [Vega]
ICGC DataPortalENSG00000198794
TCGA cBioPortalSCAMP5
AceView (NCBI)SCAMP5
Genatlas (Paris)SCAMP5
WikiGenes192683
SOURCE (Princeton)SCAMP5
Genetics Home Reference (NIH)SCAMP5
Genomic and cartography
GoldenPath hg38 (UCSC)SCAMP5  -     chr15:74995535-75021495 +  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAMP5  -     15q24.2   [Description]    (hg19-Feb_2009)
EnsemblSCAMP5 - 15q24.2 [CytoView hg19]  SCAMP5 - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBISCAMP5 [Mapview hg19]  SCAMP5 [Mapview hg38]
OMIM613766   
Gene and transcription
Genbank (Entrez)AB105192 AF495715 AK025678 AK056438 AK126940
RefSeq transcript (Entrez)NM_001178111 NM_001178112 NM_138967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAMP5
Cluster EST : UnigeneHs.374180 [ NCBI ]
CGAP (NCI)Hs.374180
Alternative Splicing GalleryENSG00000198794
Gene ExpressionSCAMP5 [ NCBI-GEO ]   SCAMP5 [ EBI - ARRAY_EXPRESS ]   SCAMP5 [ SEEK ]   SCAMP5 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAMP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)192683
GTEX Portal (Tissue expression)SCAMP5
Human Protein AtlasENSG00000198794-SCAMP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAC9
Splice isoforms : SwissVarQ8TAC9
PhosPhoSitePlusQ8TAC9
Domains : Interpro (EBI)SCAMP   
Domain families : Pfam (Sanger)SCAMP (PF04144)   
Domain families : Pfam (NCBI)pfam04144   
Conserved Domain (NCBI)SCAMP5
DMDM Disease mutations192683
Blocks (Seattle)SCAMP5
SuperfamilyQ8TAC9
Human Protein Atlas [tissue]ENSG00000198794-SCAMP5 [tissue]
Peptide AtlasQ8TAC9
HPRD18020
IPIIPI00395747   IPI00478460   IPI00922319   IPI00815758   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAC9
IntAct (EBI)Q8TAC9
FunCoupENSG00000198794
BioGRIDSCAMP5
STRING (EMBL)SCAMP5
ZODIACSCAMP5
Ontologies - Pathways
QuickGOQ8TAC9
Ontology : AmiGOGolgi membrane  protein binding  plasma membrane  exocytosis  protein transport  integral component of membrane  cell junction  synaptic vesicle membrane  SNARE complex  trans-Golgi network membrane  response to endoplasmic reticulum stress  negative regulation of endocytosis  positive regulation of calcium ion-dependent exocytosis  positive regulation of cytokine secretion  recycling endosome membrane  
Ontology : EGO-EBIGolgi membrane  protein binding  plasma membrane  exocytosis  protein transport  integral component of membrane  cell junction  synaptic vesicle membrane  SNARE complex  trans-Golgi network membrane  response to endoplasmic reticulum stress  negative regulation of endocytosis  positive regulation of calcium ion-dependent exocytosis  positive regulation of cytokine secretion  recycling endosome membrane  
NDEx NetworkSCAMP5
Atlas of Cancer Signalling NetworkSCAMP5
Wikipedia pathwaysSCAMP5
Orthology - Evolution
OrthoDB192683
GeneTree (enSembl)ENSG00000198794
Phylogenetic Trees/Animal Genes : TreeFamSCAMP5
HOVERGENQ8TAC9
HOGENOMQ8TAC9
Homologs : HomoloGeneSCAMP5
Homology/Alignments : Family Browser (UCSC)SCAMP5
Gene fusions - Rearrangements
Fusion: Tumor Portal SCAMP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAMP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAMP5
dbVarSCAMP5
ClinVarSCAMP5
1000_GenomesSCAMP5 
Exome Variant ServerSCAMP5
ExAC (Exome Aggregation Consortium)ENSG00000198794
GNOMAD BrowserENSG00000198794
Genetic variants : HAPMAP192683
Genomic Variants (DGV)SCAMP5 [DGVbeta]
DECIPHERSCAMP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAMP5 
Mutations
ICGC Data PortalSCAMP5 
TCGA Data PortalSCAMP5 
Broad Tumor PortalSCAMP5
OASIS PortalSCAMP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAMP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCAMP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAMP5
DgiDB (Drug Gene Interaction Database)SCAMP5
DoCM (Curated mutations)SCAMP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAMP5 (select a term)
intoGenSCAMP5
Cancer3DSCAMP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613766   
Orphanet
MedgenSCAMP5
Genetic Testing Registry SCAMP5
NextProtQ8TAC9 [Medical]
TSGene192683
GENETestsSCAMP5
Target ValidationSCAMP5
Huge Navigator SCAMP5 [HugePedia]
snp3D : Map Gene to Disease192683
BioCentury BCIQSCAMP5
ClinGenSCAMP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD192683
Chemical/Pharm GKB GenePA134962580
Clinical trialSCAMP5
Miscellaneous
canSAR (ICR)SCAMP5 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAMP5
EVEXSCAMP5
GoPubMedSCAMP5
iHOPSCAMP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:26:21 CET 2017

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