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SCAND1 (SCAN domain containing 1)

Identity

Alias_namesSCAN domain-containing 1
Alias_symbol (synonym)SDP1
RAZ1
Other alias
HGNC (Hugo) SCAND1
LocusID (NCBI) 51282
Atlas_Id 73000
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 35953617 and ends at 35955359 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PLXNA4 (7q32.3) / SCAND1 (20q11.23)SCAND1 (20q11.23) / PCNP (3q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAND1   10566
Cards
Entrez_Gene (NCBI)SCAND1  51282  SCAN domain containing 1
AliasesRAZ1; SDP1
GeneCards (Weizmann)SCAND1
Ensembl hg19 (Hinxton)ENSG00000171222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171222 [Gene_View]  chr20:35953617-35955359 [Contig_View]  SCAND1 [Vega]
ICGC DataPortalENSG00000171222
TCGA cBioPortalSCAND1
AceView (NCBI)SCAND1
Genatlas (Paris)SCAND1
WikiGenes51282
SOURCE (Princeton)SCAND1
Genetics Home Reference (NIH)SCAND1
Genomic and cartography
GoldenPath hg38 (UCSC)SCAND1  -     chr20:35953617-35955359 -  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAND1  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblSCAND1 - 20q11.23 [CytoView hg19]  SCAND1 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBISCAND1 [Mapview hg19]  SCAND1 [Mapview hg38]
OMIM610416   
Gene and transcription
Genbank (Entrez)AF204271 AF207829 AM392883 AM393129 BC000785
RefSeq transcript (Entrez)NM_016558 NM_033630
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAND1
Cluster EST : UnigeneHs.584909 [ NCBI ]
CGAP (NCI)Hs.584909
Alternative Splicing GalleryENSG00000171222
Gene ExpressionSCAND1 [ NCBI-GEO ]   SCAND1 [ EBI - ARRAY_EXPRESS ]   SCAND1 [ SEEK ]   SCAND1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCAND1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51282
GTEX Portal (Tissue expression)SCAND1
Human Protein AtlasENSG00000171222-SCAND1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57086   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57086  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57086
Splice isoforms : SwissVarP57086
PhosPhoSitePlusP57086
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    SCAND1   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  
Conserved Domain (NCBI)SCAND1
DMDM Disease mutations51282
Blocks (Seattle)SCAND1
SuperfamilyP57086
Human Protein Atlas [tissue]ENSG00000171222-SCAND1 [tissue]
Peptide AtlasP57086
HPRD15298
IPIIPI00025724   IPI00974359   
Protein Interaction databases
DIP (DOE-UCLA)P57086
IntAct (EBI)P57086
FunCoupENSG00000171222
BioGRIDSCAND1
STRING (EMBL)SCAND1
ZODIACSCAND1
Ontologies - Pathways
QuickGOP57086
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  regulation of transcription, DNA-templated  identical protein binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  regulation of transcription, DNA-templated  identical protein binding  
NDEx NetworkSCAND1
Atlas of Cancer Signalling NetworkSCAND1
Wikipedia pathwaysSCAND1
Orthology - Evolution
OrthoDB51282
GeneTree (enSembl)ENSG00000171222
Phylogenetic Trees/Animal Genes : TreeFamSCAND1
HOVERGENP57086
HOGENOMP57086
Homologs : HomoloGeneSCAND1
Homology/Alignments : Family Browser (UCSC)SCAND1
Gene fusions - Rearrangements
Tumor Fusion PortalSCAND1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAND1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAND1
dbVarSCAND1
ClinVarSCAND1
1000_GenomesSCAND1 
Exome Variant ServerSCAND1
ExAC (Exome Aggregation Consortium)ENSG00000171222
GNOMAD BrowserENSG00000171222
Genetic variants : HAPMAP51282
Genomic Variants (DGV)SCAND1 [DGVbeta]
DECIPHERSCAND1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAND1 
Mutations
ICGC Data PortalSCAND1 
TCGA Data PortalSCAND1 
Broad Tumor PortalSCAND1
OASIS PortalSCAND1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAND1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCAND1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAND1
DgiDB (Drug Gene Interaction Database)SCAND1
DoCM (Curated mutations)SCAND1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAND1 (select a term)
intoGenSCAND1
Cancer3DSCAND1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610416   
Orphanet
DisGeNETSCAND1
MedgenSCAND1
Genetic Testing Registry SCAND1
NextProtP57086 [Medical]
TSGene51282
GENETestsSCAND1
Target ValidationSCAND1
Huge Navigator SCAND1 [HugePedia]
snp3D : Map Gene to Disease51282
BioCentury BCIQSCAND1
ClinGenSCAND1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51282
Chemical/Pharm GKB GenePA34979
Clinical trialSCAND1
Miscellaneous
canSAR (ICR)SCAND1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAND1
EVEXSCAND1
GoPubMedSCAND1
iHOPSCAND1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:42:11 CET 2017

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