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SCAND2P (SCAN domain containing 2 pseudogene)

Identity

Alias_namesSCAND2
SCAN domain-containing 2
SCAN domain containing 2
Other alias
HGNC (Hugo) SCAND2P
LocusID (NCBI) 54581
Atlas_Id 78203
Location 15q25.2  [Link to chromosome band 15q25]

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAND2P   10567
Cards
Entrez_Gene (NCBI)SCAND2P  54581  SCAN domain containing 2 pseudogene
AliasesSCAND2
GeneCards (Weizmann)SCAND2P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  SCAND2P [Vega]
TCGA cBioPortalSCAND2P
AceView (NCBI)SCAND2P
Genatlas (Paris)SCAND2P
WikiGenes54581
SOURCE (Princeton)SCAND2P
Genetics Home Reference (NIH)SCAND2P
Genomic and cartography
GoldenPath hg38 (UCSC)SCAND2P  -  
GoldenPath hg19 (UCSC)SCAND2P  -  
EnsemblSCAND2P - [CytoView hg19]  SCAND2P - [CytoView hg38]
Mapping of homologs : NCBISCAND2P [Mapview hg19]  SCAND2P [Mapview hg38]
OMIM610417   
Gene and transcription
Genbank (Entrez)AA280726 AF229246 AI218957 AK022844 AK290489
RefSeq transcript (Entrez)NM_022050 NM_033633 NM_033634 NM_033635 NM_033636 NM_033640
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAND2P
Cluster EST : UnigeneHs.658114 [ NCBI ]
CGAP (NCI)Hs.658114
Gene ExpressionSCAND2P [ NCBI-GEO ]   SCAND2P [ EBI - ARRAY_EXPRESS ]   SCAND2P [ SEEK ]   SCAND2P [ MEM ]
Gene Expression Viewer (FireBrowse)SCAND2P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54581
GTEX Portal (Tissue expression)SCAND2P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZW5
Splice isoforms : SwissVarQ9GZW5
PhosPhoSitePlusQ9GZW5
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  
Conserved Domain (NCBI)SCAND2P
DMDM Disease mutations54581
Blocks (Seattle)SCAND2P
SuperfamilyQ9GZW5
Peptide AtlasQ9GZW5
HPRD18021
IPIIPI00004927   IPI00018761   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZW5
IntAct (EBI)Q9GZW5
BioGRIDSCAND2P
STRING (EMBL)SCAND2P
ZODIACSCAND2P
Ontologies - Pathways
QuickGOQ9GZW5
Ontology : AmiGOmolecular_function  transcription factor activity, sequence-specific DNA binding  cellular_component  nucleus  regulation of transcription, DNA-templated  biological_process  
Ontology : EGO-EBImolecular_function  transcription factor activity, sequence-specific DNA binding  cellular_component  nucleus  regulation of transcription, DNA-templated  biological_process  
NDEx NetworkSCAND2P
Atlas of Cancer Signalling NetworkSCAND2P
Wikipedia pathwaysSCAND2P
Orthology - Evolution
OrthoDB54581
Phylogenetic Trees/Animal Genes : TreeFamSCAND2P
HOVERGENQ9GZW5
HOGENOMQ9GZW5
Homologs : HomoloGeneSCAND2P
Homology/Alignments : Family Browser (UCSC)SCAND2P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAND2P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAND2P
dbVarSCAND2P
ClinVarSCAND2P
1000_GenomesSCAND2P 
Exome Variant ServerSCAND2P
ExAC (Exome Aggregation Consortium)SCAND2P (select the gene name)
Genetic variants : HAPMAP54581
Genomic Variants (DGV)SCAND2P [DGVbeta]
DECIPHERSCAND2P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAND2P 
Mutations
ICGC Data PortalSCAND2P 
TCGA Data PortalSCAND2P 
Broad Tumor PortalSCAND2P
OASIS PortalSCAND2P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSCAND2P
BioMutasearch SCAND2P
DgiDB (Drug Gene Interaction Database)SCAND2P
DoCM (Curated mutations)SCAND2P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAND2P (select a term)
intoGenSCAND2P
Cancer3DSCAND2P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610417   
Orphanet
MedgenSCAND2P
Genetic Testing Registry SCAND2P
NextProtQ9GZW5 [Medical]
TSGene54581
GENETestsSCAND2P
Target ValidationSCAND2P
Huge Navigator SCAND2P [HugePedia]
snp3D : Map Gene to Disease54581
BioCentury BCIQSCAND2P
ClinGenSCAND2P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54581
Chemical/Pharm GKB GenePA34980
Clinical trialSCAND2P
Miscellaneous
canSAR (ICR)SCAND2P (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAND2P
EVEXSCAND2P
GoPubMedSCAND2P
iHOPSCAND2P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:14 CEST 2017

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