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SCAPER (S-phase cyclin A associated protein in the ER)

Identity

Alias_namesZNF291
zinc finger protein 291
Alias_symbol (synonym)Zfp291
Other aliasMSTP063
HGNC (Hugo) SCAPER
LocusID (NCBI) 49855
Atlas_Id 73001
Location 15q24.3  [Link to chromosome band 15q24]
Location_base_pair Starts at 76348186 and ends at 76861944 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NRG4 (15q24.2) / SCAPER (15q24.3)PLA2G12A (4q25) / SCAPER (15q24.3)SCAPER (15q24.3) / AC087465.1 ()
SCAPER (15q24.3) / LINGO1 (15q24.3)SCAPER (15q24.3) / SCAPER (15q24.3)SCAPER (15q24.3) / TM6SF1 (15q25.2)
SGCE (7q21.3) / SCAPER (15q24.3)TNRC6C (17q25.3) / SCAPER (15q24.3)SCAPER AC087465.1
SCAPER LINGO1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCAPER   13081
Cards
Entrez_Gene (NCBI)SCAPER  49855  S-phase cyclin A associated protein in the ER
AliasesMSTP063; ZNF291; Zfp291
GeneCards (Weizmann)SCAPER
Ensembl hg19 (Hinxton)ENSG00000140386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140386 [Gene_View]  chr15:76348186-76861944 [Contig_View]  SCAPER [Vega]
ICGC DataPortalENSG00000140386
TCGA cBioPortalSCAPER
AceView (NCBI)SCAPER
Genatlas (Paris)SCAPER
WikiGenes49855
SOURCE (Princeton)SCAPER
Genetics Home Reference (NIH)SCAPER
Genomic and cartography
GoldenPath hg38 (UCSC)SCAPER  -     chr15:76348186-76861944 -  15q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCAPER  -     15q24.3   [Description]    (hg19-Feb_2009)
EnsemblSCAPER - 15q24.3 [CytoView hg19]  SCAPER - 15q24.3 [CytoView hg38]
Mapping of homologs : NCBISCAPER [Mapview hg19]  SCAPER [Mapview hg38]
OMIM611611   
Gene and transcription
Genbank (Entrez)AB040887 AF119814 AF242528 AK025663 AK056095
RefSeq transcript (Entrez)NM_001145923 NM_020843
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCAPER
Cluster EST : UnigeneHs.458986 [ NCBI ]
CGAP (NCI)Hs.458986
Alternative Splicing GalleryENSG00000140386
Gene ExpressionSCAPER [ NCBI-GEO ]   SCAPER [ EBI - ARRAY_EXPRESS ]   SCAPER [ SEEK ]   SCAPER [ MEM ]
Gene Expression Viewer (FireBrowse)SCAPER [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)49855
GTEX Portal (Tissue expression)SCAPER
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BY12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BY12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BY12
Splice isoforms : SwissVarQ9BY12
PhosPhoSitePlusQ9BY12
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)SCAPER_N    Znf_U1   
Domain families : Pfam (Sanger)SCAPER_N (PF16501)   
Domain families : Pfam (NCBI)pfam16501   
Domain families : Smart (EMBL)ZnF_U1 (SM00451)  
Conserved Domain (NCBI)SCAPER
DMDM Disease mutations49855
Blocks (Seattle)SCAPER
SuperfamilyQ9BY12
Human Protein AtlasENSG00000140386
Peptide AtlasQ9BY12
HPRD11704
IPIIPI00334433   IPI00924858   IPI00307114   
Protein Interaction databases
DIP (DOE-UCLA)Q9BY12
IntAct (EBI)Q9BY12
FunCoupENSG00000140386
BioGRIDSCAPER
STRING (EMBL)SCAPER
ZODIACSCAPER
Ontologies - Pathways
QuickGOQ9BY12
Ontology : AmiGOnucleic acid binding  nucleus  endoplasmic reticulum  cytosol  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  nucleus  endoplasmic reticulum  cytosol  zinc ion binding  
NDEx NetworkSCAPER
Atlas of Cancer Signalling NetworkSCAPER
Wikipedia pathwaysSCAPER
Orthology - Evolution
OrthoDB49855
GeneTree (enSembl)ENSG00000140386
Phylogenetic Trees/Animal Genes : TreeFamSCAPER
HOVERGENQ9BY12
HOGENOMQ9BY12
Homologs : HomoloGeneSCAPER
Homology/Alignments : Family Browser (UCSC)SCAPER
Gene fusions - Rearrangements
Fusion: TCGASCAPER AC087465.1
Fusion: TCGASCAPER LINGO1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCAPER [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCAPER
dbVarSCAPER
ClinVarSCAPER
1000_GenomesSCAPER 
Exome Variant ServerSCAPER
ExAC (Exome Aggregation Consortium)SCAPER (select the gene name)
Genetic variants : HAPMAP49855
Genomic Variants (DGV)SCAPER [DGVbeta]
DECIPHERSCAPER [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCAPER 
Mutations
ICGC Data PortalSCAPER 
TCGA Data PortalSCAPER 
Broad Tumor PortalSCAPER
OASIS PortalSCAPER [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCAPER  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCAPER
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCAPER
DgiDB (Drug Gene Interaction Database)SCAPER
DoCM (Curated mutations)SCAPER (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCAPER (select a term)
intoGenSCAPER
Cancer3DSCAPER(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611611   
Orphanet
MedgenSCAPER
Genetic Testing Registry SCAPER
NextProtQ9BY12 [Medical]
TSGene49855
GENETestsSCAPER
Target ValidationSCAPER
Huge Navigator SCAPER [HugePedia]
snp3D : Map Gene to Disease49855
BioCentury BCIQSCAPER
ClinGenSCAPER
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD49855
Chemical/Pharm GKB GenePA162402512
Clinical trialSCAPER
Miscellaneous
canSAR (ICR)SCAPER (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCAPER
EVEXSCAPER
GoPubMedSCAPER
iHOPSCAPER
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:38:08 CEST 2017

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