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SCARA3 (scavenger receptor class A member 3)

Identity

Alias_namesscavenger receptor class A
Alias_symbol (synonym)CSR1
CSR
MSLR1
APC7
MSRL1
Other alias
HGNC (Hugo) SCARA3
LocusID (NCBI) 51435
Atlas_Id 45966
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 27634060 and ends at 27673020 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HMBOX1 (8p21.1) / SCARA3 (8p21.1)MBD6 (12q13.3) / SCARA3 (8p21.1)SCARA3 (8p21.1) / MCM7 (7q22.1)
HMBOX1 8p21.1 / SCARA3 8p21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARA3   19000
Cards
Entrez_Gene (NCBI)SCARA3  51435  scavenger receptor class A member 3
AliasesAPC7; CSR; CSR1; MSLR1; 
MSRL1
GeneCards (Weizmann)SCARA3
Ensembl hg19 (Hinxton)ENSG00000168077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168077 [Gene_View]  chr8:27634060-27673020 [Contig_View]  SCARA3 [Vega]
ICGC DataPortalENSG00000168077
TCGA cBioPortalSCARA3
AceView (NCBI)SCARA3
Genatlas (Paris)SCARA3
WikiGenes51435
SOURCE (Princeton)SCARA3
Genetics Home Reference (NIH)SCARA3
Genomic and cartography
GoldenPath hg38 (UCSC)SCARA3  -     chr8:27634060-27673020 +  8p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARA3  -     8p21.1   [Description]    (hg19-Feb_2009)
EnsemblSCARA3 - 8p21.1 [CytoView hg19]  SCARA3 - 8p21.1 [CytoView hg38]
Mapping of homologs : NCBISCARA3 [Mapview hg19]  SCARA3 [Mapview hg38]
OMIM602728   
Gene and transcription
Genbank (Entrez)AB007829 AB007830 BC060811 BC075067 BC075068
RefSeq transcript (Entrez)NM_016240 NM_182826
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARA3
Cluster EST : UnigeneHs.128856 [ NCBI ]
CGAP (NCI)Hs.128856
Alternative Splicing GalleryENSG00000168077
Gene ExpressionSCARA3 [ NCBI-GEO ]   SCARA3 [ EBI - ARRAY_EXPRESS ]   SCARA3 [ SEEK ]   SCARA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51435
GTEX Portal (Tissue expression)SCARA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6AZY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6AZY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6AZY7
Splice isoforms : SwissVarQ6AZY7
PhosPhoSitePlusQ6AZY7
Domains : Interpro (EBI)Collagen   
Domain families : Pfam (Sanger)Collagen (PF01391)   
Domain families : Pfam (NCBI)pfam01391   
Conserved Domain (NCBI)SCARA3
DMDM Disease mutations51435
Blocks (Seattle)SCARA3
SuperfamilyQ6AZY7
Human Protein AtlasENSG00000168077
Peptide AtlasQ6AZY7
HPRD04104
IPIIPI00337584   IPI00396540   
Protein Interaction databases
DIP (DOE-UCLA)Q6AZY7
IntAct (EBI)Q6AZY7
FunCoupENSG00000168077
BioGRIDSCARA3
STRING (EMBL)SCARA3
ZODIACSCARA3
Ontologies - Pathways
QuickGOQ6AZY7
Ontology : AmiGOGolgi membrane  scavenger receptor activity  protein binding  collagen trimer  endoplasmic reticulum  endoplasmic reticulum membrane  receptor-mediated endocytosis  response to oxidative stress  UV protection  integral component of membrane  toll-like receptor 3 signaling pathway  
Ontology : EGO-EBIGolgi membrane  scavenger receptor activity  protein binding  collagen trimer  endoplasmic reticulum  endoplasmic reticulum membrane  receptor-mediated endocytosis  response to oxidative stress  UV protection  integral component of membrane  toll-like receptor 3 signaling pathway  
NDEx NetworkSCARA3
Atlas of Cancer Signalling NetworkSCARA3
Wikipedia pathwaysSCARA3
Orthology - Evolution
OrthoDB51435
GeneTree (enSembl)ENSG00000168077
Phylogenetic Trees/Animal Genes : TreeFamSCARA3
HOVERGENQ6AZY7
HOGENOMQ6AZY7
Homologs : HomoloGeneSCARA3
Homology/Alignments : Family Browser (UCSC)SCARA3
Gene fusions - Rearrangements
Fusion : MitelmanHMBOX1/SCARA3 [8p21.1/8p21.1]  [t(8;8)(p21;p21)]  
Fusion: TCGAHMBOX1 8p21.1 SCARA3 8p21.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCARA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCARA3
dbVarSCARA3
ClinVarSCARA3
1000_GenomesSCARA3 
Exome Variant ServerSCARA3
ExAC (Exome Aggregation Consortium)SCARA3 (select the gene name)
Genetic variants : HAPMAP51435
Genomic Variants (DGV)SCARA3 [DGVbeta]
DECIPHERSCARA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCARA3 
Mutations
ICGC Data PortalSCARA3 
TCGA Data PortalSCARA3 
Broad Tumor PortalSCARA3
OASIS PortalSCARA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCARA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCARA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCARA3
DgiDB (Drug Gene Interaction Database)SCARA3
DoCM (Curated mutations)SCARA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCARA3 (select a term)
intoGenSCARA3
Cancer3DSCARA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602728   
Orphanet
MedgenSCARA3
Genetic Testing Registry SCARA3
NextProtQ6AZY7 [Medical]
TSGene51435
GENETestsSCARA3
Target ValidationSCARA3
Huge Navigator SCARA3 [HugePedia]
snp3D : Map Gene to Disease51435
BioCentury BCIQSCARA3
ClinGenSCARA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51435
Chemical/Pharm GKB GenePA38775
Clinical trialSCARA3
Miscellaneous
canSAR (ICR)SCARA3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARA3
EVEXSCARA3
GoPubMedSCARA3
iHOPSCARA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:54:29 CEST 2017

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