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SCARA5 (scavenger receptor class A member 5)

Identity

Other aliasNET33
Tesr
HGNC (Hugo) SCARA5
LocusID (NCBI) 286133
Atlas_Id 56703
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 27869882 and ends at 27992852 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TBCD (17q25.3) / SCARA5 (8p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARA5   28701
Cards
Entrez_Gene (NCBI)SCARA5  286133  scavenger receptor class A member 5
AliasesNET33; Tesr
GeneCards (Weizmann)SCARA5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:27869882-27992852 [Contig_View]  SCARA5 [Vega]
TCGA cBioPortalSCARA5
AceView (NCBI)SCARA5
Genatlas (Paris)SCARA5
WikiGenes286133
SOURCE (Princeton)SCARA5
Genetics Home Reference (NIH)SCARA5
Genomic and cartography
GoldenPath hg38 (UCSC)SCARA5  -     chr8:27869882-27992852 -  8p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARA5  -     8p21.1   [Description]    (hg19-Feb_2009)
EnsemblSCARA5 - 8p21.1 [CytoView hg19]  SCARA5 - 8p21.1 [CytoView hg38]
Mapping of homologs : NCBISCARA5 [Mapview hg19]  SCARA5 [Mapview hg38]
OMIM611306   
Gene and transcription
Genbank (Entrez)AA934589 AK172746 AK301006 AY337579 AY358150
RefSeq transcript (Entrez)NM_173833
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARA5
Cluster EST : UnigeneHs.591833 [ NCBI ]
CGAP (NCI)Hs.591833
Gene ExpressionSCARA5 [ NCBI-GEO ]   SCARA5 [ EBI - ARRAY_EXPRESS ]   SCARA5 [ SEEK ]   SCARA5 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286133
GTEX Portal (Tissue expression)SCARA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMJ2
Splice isoforms : SwissVarQ6ZMJ2
PhosPhoSitePlusQ6ZMJ2
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)Collagen    SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)Collagen (PF01391)    SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam01391    pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)SCARA5
DMDM Disease mutations286133
Blocks (Seattle)SCARA5
SuperfamilyQ6ZMJ2
Peptide AtlasQ6ZMJ2
IPIIPI00395914   IPI00794960   IPI00385066   IPI00432780   IPI00977647   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMJ2
IntAct (EBI)Q6ZMJ2
BioGRIDSCARA5
STRING (EMBL)SCARA5
ZODIACSCARA5
Ontologies - Pathways
QuickGOQ6ZMJ2
Ontology : AmiGOscavenger receptor activity  integral component of plasma membrane  cellular iron ion homeostasis  endocytosis  receptor-mediated endocytosis  cell surface  regulation of gene expression  regulation of blood coagulation  cellular response to heat  iron ion transmembrane transport  protein homotrimerization  ferritin receptor activity  
Ontology : EGO-EBIscavenger receptor activity  integral component of plasma membrane  cellular iron ion homeostasis  endocytosis  receptor-mediated endocytosis  cell surface  regulation of gene expression  regulation of blood coagulation  cellular response to heat  iron ion transmembrane transport  protein homotrimerization  ferritin receptor activity  
NDEx NetworkSCARA5
Atlas of Cancer Signalling NetworkSCARA5
Wikipedia pathwaysSCARA5
Orthology - Evolution
OrthoDB286133
Phylogenetic Trees/Animal Genes : TreeFamSCARA5
HOVERGENQ6ZMJ2
HOGENOMQ6ZMJ2
Homologs : HomoloGeneSCARA5
Homology/Alignments : Family Browser (UCSC)SCARA5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCARA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCARA5
dbVarSCARA5
ClinVarSCARA5
1000_GenomesSCARA5 
Exome Variant ServerSCARA5
ExAC (Exome Aggregation Consortium)SCARA5 (select the gene name)
Genetic variants : HAPMAP286133
Genomic Variants (DGV)SCARA5 [DGVbeta]
DECIPHERSCARA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCARA5 
Mutations
ICGC Data PortalSCARA5 
TCGA Data PortalSCARA5 
Broad Tumor PortalSCARA5
OASIS PortalSCARA5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCARA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCARA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCARA5
DgiDB (Drug Gene Interaction Database)SCARA5
DoCM (Curated mutations)SCARA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCARA5 (select a term)
intoGenSCARA5
Cancer3DSCARA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611306   
Orphanet
MedgenSCARA5
Genetic Testing Registry SCARA5
NextProtQ6ZMJ2 [Medical]
TSGene286133
GENETestsSCARA5
Target ValidationSCARA5
Huge Navigator SCARA5 [HugePedia]
snp3D : Map Gene to Disease286133
BioCentury BCIQSCARA5
ClinGenSCARA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286133
Chemical/Pharm GKB GenePA142670948
Clinical trialSCARA5
Miscellaneous
canSAR (ICR)SCARA5 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARA5
EVEXSCARA5
GoPubMedSCARA5
iHOPSCARA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:13:47 CEST 2017

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