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SCARF1 (scavenger receptor class F member 1)

Identity

Alias_namesscavenger receptor class F, member 1
Alias_symbol (synonym)SREC
KIAA0149
Other aliasSREC-I
SREC1
HGNC (Hugo) SCARF1
LocusID (NCBI) 8578
Atlas_Id 73003
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1633858 and ends at 1645789 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		SLC43A2 (17p13.3) / SCARF1 (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCARF1   16820
Cards
Entrez_Gene (NCBI)SCARF1  8578  scavenger receptor class F member 1
AliasesSREC; SREC-I; SREC1
GeneCards (Weizmann)SCARF1
Ensembl hg19 (Hinxton)ENSG00000074660 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000074660 [Gene_View]  chr17:1633858-1645789 [Contig_View]  SCARF1 [Vega]
ICGC DataPortalENSG00000074660
TCGA cBioPortalSCARF1
AceView (NCBI)SCARF1
Genatlas (Paris)SCARF1
WikiGenes8578
SOURCE (Princeton)SCARF1
Genetics Home Reference (NIH)SCARF1
Genomic and cartography
GoldenPath hg38 (UCSC)SCARF1  -     chr17:1633858-1645789 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARF1  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblSCARF1 - 17p13.3 [CytoView hg19]  SCARF1 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBISCARF1 [Mapview hg19]  SCARF1 [Mapview hg38]
OMIM607873   
Gene and transcription
Genbank (Entrez)AB052947 AB052948 AB052949 AB052950 AK291810
RefSeq transcript (Entrez)NM_003693 NM_145350 NM_145352
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187611
Consensus coding sequences : CCDS (NCBI)SCARF1
Cluster EST : UnigeneHs.647430 [ NCBI ]
CGAP (NCI)Hs.647430
Alternative Splicing GalleryENSG00000074660
Gene ExpressionSCARF1 [ NCBI-GEO ]   SCARF1 [ EBI - ARRAY_EXPRESS ]   SCARF1 [ SEEK ]   SCARF1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8578
GTEX Portal (Tissue expression)SCARF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14162   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14162  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14162
Splice isoforms : SwissVarQ14162
PhosPhoSitePlusQ14162
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    Growth_fac_rcpt_    Laminin_EGF    SCARF1   
Domain families : Pfam (Sanger)Laminin_EGF (PF00053)   
Domain families : Pfam (NCBI)pfam00053   
Domain families : Smart (EMBL)EGF (SM00181)  
Conserved Domain (NCBI)SCARF1
DMDM Disease mutations8578
Blocks (Seattle)SCARF1
SuperfamilyQ14162
Human Protein AtlasENSG00000074660
Peptide AtlasQ14162
HPRD06386
IPIIPI00066367   IPI00169257   IPI00169258   IPI00337750   IPI00337751   
Protein Interaction databases
DIP (DOE-UCLA)Q14162
IntAct (EBI)Q14162
FunCoupENSG00000074660
BioGRIDSCARF1
STRING (EMBL)SCARF1
ZODIACSCARF1
Ontologies - Pathways
QuickGOQ14162
Ontology : AmiGOtransmembrane signaling receptor activity  scavenger receptor activity  plasma membrane  cholesterol catabolic process  receptor-mediated endocytosis  cell adhesion  signal transduction  positive regulation of neuron projection development  integral component of membrane  neuron remodeling  dendrite development  low-density lipoprotein particle binding  endocytic vesicle membrane  positive regulation of axon regeneration  
Ontology : EGO-EBItransmembrane signaling receptor activity  scavenger receptor activity  plasma membrane  cholesterol catabolic process  receptor-mediated endocytosis  cell adhesion  signal transduction  positive regulation of neuron projection development  integral component of membrane  neuron remodeling  dendrite development  low-density lipoprotein particle binding  endocytic vesicle membrane  positive regulation of axon regeneration  
NDEx NetworkSCARF1
Atlas of Cancer Signalling NetworkSCARF1
Wikipedia pathwaysSCARF1
Orthology - Evolution
OrthoDB8578
GeneTree (enSembl)ENSG00000074660
Phylogenetic Trees/Animal Genes : TreeFamSCARF1
HOVERGENQ14162
HOGENOMQ14162
Homologs : HomoloGeneSCARF1
Homology/Alignments : Family Browser (UCSC)SCARF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCARF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCARF1
dbVarSCARF1
ClinVarSCARF1
1000_GenomesSCARF1 
Exome Variant ServerSCARF1
ExAC (Exome Aggregation Consortium)SCARF1 (select the gene name)
Genetic variants : HAPMAP8578
Genomic Variants (DGV)SCARF1 [DGVbeta]
DECIPHERSCARF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCARF1 
Mutations
ICGC Data PortalSCARF1 
TCGA Data PortalSCARF1 
Broad Tumor PortalSCARF1
OASIS PortalSCARF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSCARF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSCARF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCARF1
DgiDB (Drug Gene Interaction Database)SCARF1
DoCM (Curated mutations)SCARF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCARF1 (select a term)
intoGenSCARF1
Cancer3DSCARF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607873   
Orphanet
MedgenSCARF1
Genetic Testing Registry SCARF1
NextProtQ14162 [Medical]
TSGene8578
GENETestsSCARF1
Target ValidationSCARF1
Huge Navigator SCARF1 [HugePedia]
snp3D : Map Gene to Disease8578
BioCentury BCIQSCARF1
ClinGenSCARF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8578
Chemical/Pharm GKB GenePA38420
Clinical trialSCARF1
Miscellaneous
canSAR (ICR)SCARF1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARF1
EVEXSCARF1
GoPubMedSCARF1
iHOPSCARF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:56 CEST 2017
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