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SCARF2 (scavenger receptor class F member 2)

Identity

Alias_namesscavenger receptor class F, member 2
Alias_symbol (synonym)SREC-II
SREC2
HUMZD58C02
Other aliasNSR1
SRECRP-1
VDEGS
HGNC (Hugo) SCARF2
LocusID (NCBI) 91179
Atlas_Id 73004
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 20424584 and ends at 20437859 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCARF2 (22q11.21) / AKAP9 (7q21.2)SCARF2 (22q11.21) / DPPA2 (3q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARF2   19869
Cards
Entrez_Gene (NCBI)SCARF2  91179  scavenger receptor class F member 2
AliasesNSR1; SREC-II; SREC2; SRECRP-1; 
VDEGS
GeneCards (Weizmann)SCARF2
Ensembl hg19 (Hinxton)ENSG00000244486 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244486 [Gene_View]  chr22:20424584-20437859 [Contig_View]  SCARF2 [Vega]
ICGC DataPortalENSG00000244486
TCGA cBioPortalSCARF2
AceView (NCBI)SCARF2
Genatlas (Paris)SCARF2
WikiGenes91179
SOURCE (Princeton)SCARF2
Genetics Home Reference (NIH)SCARF2
Genomic and cartography
GoldenPath hg38 (UCSC)SCARF2  -     chr22:20424584-20437859 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARF2  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblSCARF2 - 22q11.21 [CytoView hg19]  SCARF2 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBISCARF2 [Mapview hg19]  SCARF2 [Mapview hg38]
OMIM600920   613619   
Gene and transcription
Genbank (Entrez)AB024433 AB052951 AF088043 AF522196 AW301146
RefSeq transcript (Entrez)NM_153334 NM_182895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARF2
Cluster EST : UnigeneHs.474251 [ NCBI ]
CGAP (NCI)Hs.474251
Alternative Splicing GalleryENSG00000244486
Gene ExpressionSCARF2 [ NCBI-GEO ]   SCARF2 [ EBI - ARRAY_EXPRESS ]   SCARF2 [ SEEK ]   SCARF2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91179
GTEX Portal (Tissue expression)SCARF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GP6
Splice isoforms : SwissVarQ96GP6
PhosPhoSitePlusQ96GP6
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (EBI)EGF-like_CS    EGF-like_dom    Growth_fac_rcpt_    Laminin_EGF    Scarf2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EGF (SM00181)  EGF_Lam (SM00180)  
Conserved Domain (NCBI)SCARF2
DMDM Disease mutations91179
Blocks (Seattle)SCARF2
SuperfamilyQ96GP6
Human Protein AtlasENSG00000244486
Peptide AtlasQ96GP6
HPRD15299
IPIIPI00305610   IPI00975461   IPI00412711   IPI00947008   
Protein Interaction databases
DIP (DOE-UCLA)Q96GP6
IntAct (EBI)Q96GP6
FunCoupENSG00000244486
BioGRIDSCARF2
STRING (EMBL)SCARF2
ZODIACSCARF2
Ontologies - Pathways
QuickGOQ96GP6
Ontology : AmiGOprotein binding  focal adhesion  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  integral component of membrane  
Ontology : EGO-EBIprotein binding  focal adhesion  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  integral component of membrane  
NDEx NetworkSCARF2
Atlas of Cancer Signalling NetworkSCARF2
Wikipedia pathwaysSCARF2
Orthology - Evolution
OrthoDB91179
GeneTree (enSembl)ENSG00000244486
Phylogenetic Trees/Animal Genes : TreeFamSCARF2
HOVERGENQ96GP6
HOGENOMQ96GP6
Homologs : HomoloGeneSCARF2
Homology/Alignments : Family Browser (UCSC)SCARF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSCARF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SCARF2
dbVarSCARF2
ClinVarSCARF2
1000_GenomesSCARF2 
Exome Variant ServerSCARF2
ExAC (Exome Aggregation Consortium)SCARF2 (select the gene name)
Genetic variants : HAPMAP91179
Genomic Variants (DGV)SCARF2 [DGVbeta]
DECIPHERSCARF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSCARF2 
Mutations
ICGC Data PortalSCARF2 
TCGA Data PortalSCARF2 
Broad Tumor PortalSCARF2
OASIS PortalSCARF2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSCARF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SCARF2
DgiDB (Drug Gene Interaction Database)SCARF2
DoCM (Curated mutations)SCARF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SCARF2 (select a term)
intoGenSCARF2
Cancer3DSCARF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600920    613619   
Orphanet3011   
MedgenSCARF2
Genetic Testing Registry SCARF2
NextProtQ96GP6 [Medical]
TSGene91179
GENETestsSCARF2
Target ValidationSCARF2
Huge Navigator SCARF2 [HugePedia]
snp3D : Map Gene to Disease91179
BioCentury BCIQSCARF2
ClinGenSCARF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91179
Chemical/Pharm GKB GenePA134908523
Clinical trialSCARF2
Miscellaneous
canSAR (ICR)SCARF2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARF2
EVEXSCARF2
GoPubMedSCARF2
iHOPSCARF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:56 CEST 2017

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