Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCARNA1 (small Cajal body-specific RNA 1)

Identity

Alias (NCBI)ACA35
HGNC (Hugo) SCARNA1
HGNC Alias symbACA35
LocusID (NCBI) 677774
Atlas_Id 73005
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 27834401 and ends at 27834566 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA1   32555
Cards
Entrez_Gene (NCBI)SCARNA1  677774  small Cajal body-specific RNA 1
AliasesACA35
GeneCards (Weizmann)SCARNA1
Ensembl hg19 (Hinxton)ENSG00000252947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000252947 [Gene_View]  ENSG00000252947 [Sequence]  chr1:27834401-27834566 [Contig_View]  SCARNA1 [Vega]
ICGC DataPortalENSG00000252947
TCGA cBioPortalSCARNA1
AceView (NCBI)SCARNA1
Genatlas (Paris)SCARNA1
WikiGenes677774
SOURCE (Princeton)SCARNA1
Genetics Home Reference (NIH)SCARNA1
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA1  -     chr1:27834401-27834566 +  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA1  -     1p35.3   [Description]    (hg19-Feb_2009)
GoldenPathSCARNA1 - 1p35.3 [CytoView hg19]  SCARNA1 - 1p35.3 [CytoView hg38]
ImmunoBaseENSG00000252947
genome Data Viewer NCBISCARNA1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ609484
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA1
Alternative Splicing GalleryENSG00000252947
Gene ExpressionSCARNA1 [ NCBI-GEO ]   SCARNA1 [ EBI - ARRAY_EXPRESS ]   SCARNA1 [ SEEK ]   SCARNA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA1 [ Firebrowse - Broad ]
GenevisibleExpression of SCARNA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)677774
GTEX Portal (Tissue expression)SCARNA1
Human Protein AtlasENSG00000252947-SCARNA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA1
DMDM Disease mutations677774
Blocks (Seattle)SCARNA1
Human Protein Atlas [tissue]ENSG00000252947-SCARNA1 [tissue]
Protein Interaction databases
FunCoupENSG00000252947
BioGRIDSCARNA1
STRING (EMBL)SCARNA1
ZODIACSCARNA1
Ontologies - Pathways
Huge Navigator SCARNA1 [HugePedia]
snp3D : Map Gene to Disease677774
BioCentury BCIQSCARNA1
ClinGenSCARNA1
Clinical trials, drugs, therapy
Protein Interactions : CTD677774
Pharm GKB GenePA144596383
Clinical trialSCARNA1
Miscellaneous
canSAR (ICR)SCARNA1 (select the gene name)
HarmonizomeSCARNA1
DataMed IndexSCARNA1
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA1
EVEXSCARNA1
GoPubMedSCARNA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:26:51 CEST 2020

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