Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCARNA11 (small Cajal body-specific RNA 11)

Identity

Alias_symbol (synonym)ACA57
Other alias
HGNC (Hugo) SCARNA11
LocusID (NCBI) 677780
Atlas_Id 73007
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6581473 and ends at 6581609 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA11   32568
Cards
Entrez_Gene (NCBI)SCARNA11  677780  small Cajal body-specific RNA 11
AliasesACA57
GeneCards (Weizmann)SCARNA11
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:6581473-6581609 [Contig_View]  SCARNA11 [Vega]
TCGA cBioPortalSCARNA11
AceView (NCBI)SCARNA11
Genatlas (Paris)SCARNA11
WikiGenes677780
SOURCE (Princeton)SCARNA11
Genetics Home Reference (NIH)SCARNA11
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA11  -     chr12:6581473-6581609 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA11  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblSCARNA11 - 12p13.31 [CytoView hg19]  SCARNA11 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBISCARNA11 [Mapview hg19]  SCARNA11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609487
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA11
Cluster EST : UnigeneHs.689692 [ NCBI ]
CGAP (NCI)Hs.689692
Gene ExpressionSCARNA11 [ NCBI-GEO ]   SCARNA11 [ EBI - ARRAY_EXPRESS ]   SCARNA11 [ SEEK ]   SCARNA11 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677780
GTEX Portal (Tissue expression)SCARNA11
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA11
DMDM Disease mutations677780
Blocks (Seattle)SCARNA11
Protein Interaction databases
BioGRIDSCARNA11
STRING (EMBL)SCARNA11
ZODIACSCARNA11
Ontologies - Pathways
Huge Navigator SCARNA11 [HugePedia]
snp3D : Map Gene to Disease677780
BioCentury BCIQSCARNA11
ClinGenSCARNA11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677780
Chemical/Pharm GKB GenePA144596371
Clinical trialSCARNA11
Miscellaneous
canSAR (ICR)SCARNA11 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA11
EVEXSCARNA11
GoPubMedSCARNA11
iHOPSCARNA11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:15 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.