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SCARNA12 (small Cajal body-specific RNA 12)

Identity

Alias_symbol (synonym)U89
Other alias
HGNC (Hugo) SCARNA12
LocusID (NCBI) 677777
Atlas_Id 73008
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6967337 and ends at 6967606 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA12   32569
Cards
Entrez_Gene (NCBI)SCARNA12  677777  small Cajal body-specific RNA 12
AliasesU89
GeneCards (Weizmann)SCARNA12
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:6967337-6967606 [Contig_View]  SCARNA12 [Vega]
TCGA cBioPortalSCARNA12
AceView (NCBI)SCARNA12
Genatlas (Paris)SCARNA12
WikiGenes677777
SOURCE (Princeton)SCARNA12
Genetics Home Reference (NIH)SCARNA12
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA12  -     chr12:6967337-6967606 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA12  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblSCARNA12 - 12p13.31 [CytoView hg19]  SCARNA12 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBISCARNA12 [Mapview hg19]  SCARNA12 [Mapview hg38]
OMIM615642   
Gene and transcription
Genbank (Entrez)AY077739
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA12
Cluster EST : UnigeneHs.689636 [ NCBI ]
CGAP (NCI)Hs.689636
Gene ExpressionSCARNA12 [ NCBI-GEO ]   SCARNA12 [ EBI - ARRAY_EXPRESS ]   SCARNA12 [ SEEK ]   SCARNA12 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677777
GTEX Portal (Tissue expression)SCARNA12
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA12
DMDM Disease mutations677777
Blocks (Seattle)SCARNA12
Protein Interaction databases
BioGRIDSCARNA12
STRING (EMBL)SCARNA12
ZODIACSCARNA12
Ontologies - Pathways
Huge Navigator SCARNA12 [HugePedia]
snp3D : Map Gene to Disease677777
BioCentury BCIQSCARNA12
ClinGenSCARNA12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677777
Chemical/Pharm GKB GenePA144596372
Clinical trialSCARNA12
Miscellaneous
canSAR (ICR)SCARNA12 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA12
EVEXSCARNA12
GoPubMedSCARNA12
iHOPSCARNA12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:27:23 CET 2017

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