Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCARNA13 (small Cajal body-specific RNA 13)

Identity

Alias_symbol (synonym)U93
Other alias
HGNC (Hugo) SCARNA13
LocusID (NCBI) 677768
Atlas_Id 73009
Location 14q32.13  [Link to chromosome band 14q32]
Location_base_pair Starts at 95533355 and ends at 95533629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA13   32570
Cards
Entrez_Gene (NCBI)SCARNA13  677768  small Cajal body-specific RNA 13
AliasesU93
GeneCards (Weizmann)SCARNA13
Ensembl hg19 (Hinxton)ENSG00000252481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000252481 [Gene_View]  chr14:95533355-95533629 [Contig_View]  SCARNA13 [Vega]
ICGC DataPortalENSG00000252481
TCGA cBioPortalSCARNA13
AceView (NCBI)SCARNA13
Genatlas (Paris)SCARNA13
WikiGenes677768
SOURCE (Princeton)SCARNA13
Genetics Home Reference (NIH)SCARNA13
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA13  -     chr14:95533355-95533629 -  14q32.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA13  -     14q32.13   [Description]    (hg19-Feb_2009)
EnsemblSCARNA13 - 14q32.13 [CytoView hg19]  SCARNA13 - 14q32.13 [CytoView hg38]
Mapping of homologs : NCBISCARNA13 [Mapview hg19]  SCARNA13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF492209
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA13
Cluster EST : UnigeneHs.448753 [ NCBI ]
CGAP (NCI)Hs.448753
Alternative Splicing GalleryENSG00000252481
Gene ExpressionSCARNA13 [ NCBI-GEO ]   SCARNA13 [ EBI - ARRAY_EXPRESS ]   SCARNA13 [ SEEK ]   SCARNA13 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677768
GTEX Portal (Tissue expression)SCARNA13
Human Protein AtlasENSG00000252481-SCARNA13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA13
DMDM Disease mutations677768
Blocks (Seattle)SCARNA13
Human Protein Atlas [tissue]ENSG00000252481-SCARNA13 [tissue]
Protein Interaction databases
FunCoupENSG00000252481
BioGRIDSCARNA13
STRING (EMBL)SCARNA13
ZODIACSCARNA13
Ontologies - Pathways
Huge Navigator SCARNA13 [HugePedia]
snp3D : Map Gene to Disease677768
BioCentury BCIQSCARNA13
ClinGenSCARNA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677768
Chemical/Pharm GKB GenePA144596373
Clinical trialSCARNA13
Miscellaneous
canSAR (ICR)SCARNA13 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA13
EVEXSCARNA13
GoPubMedSCARNA13
iHOPSCARNA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:26:23 CET 2017

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