Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCARNA16 (small Cajal body-specific RNA 16)

Identity

Alias_symbol (synonym)ACA47
Other alias
HGNC (Hugo) SCARNA16
LocusID (NCBI) 677781
Atlas_Id 73012
Location 17q25.2  [Link to chromosome band 17q25]
Location_base_pair Starts at 77089307 and ends at 77089493 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SCARNA16 (17q25.2) / SEC14L1 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA16   32573
Cards
Entrez_Gene (NCBI)SCARNA16  677781  small Cajal body-specific RNA 16
AliasesACA47
GeneCards (Weizmann)SCARNA16
Ensembl hg19 (Hinxton)ENSG00000275143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275143 [Gene_View]  chr17:77089307-77089493 [Contig_View]  SCARNA16 [Vega]
ICGC DataPortalENSG00000275143
TCGA cBioPortalSCARNA16
AceView (NCBI)SCARNA16
Genatlas (Paris)SCARNA16
WikiGenes677781
SOURCE (Princeton)SCARNA16
Genetics Home Reference (NIH)SCARNA16
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA16  -     chr17:77089307-77089493 +  17q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA16  -     17q25.2   [Description]    (hg19-Feb_2009)
EnsemblSCARNA16 - 17q25.2 [CytoView hg19]  SCARNA16 - 17q25.2 [CytoView hg38]
Mapping of homologs : NCBISCARNA16 [Mapview hg19]  SCARNA16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609486
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA16
Cluster EST : UnigeneHs.720923 [ NCBI ]
CGAP (NCI)Hs.720923
Alternative Splicing GalleryENSG00000275143
Gene ExpressionSCARNA16 [ NCBI-GEO ]   SCARNA16 [ EBI - ARRAY_EXPRESS ]   SCARNA16 [ SEEK ]   SCARNA16 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677781
GTEX Portal (Tissue expression)SCARNA16
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA16
DMDM Disease mutations677781
Blocks (Seattle)SCARNA16
Human Protein AtlasENSG00000275143
Protein Interaction databases
FunCoupENSG00000275143
BioGRIDSCARNA16
STRING (EMBL)SCARNA16
ZODIACSCARNA16
Ontologies - Pathways
Huge Navigator SCARNA16 [HugePedia]
snp3D : Map Gene to Disease677781
BioCentury BCIQSCARNA16
ClinGenSCARNA16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677781
Chemical/Pharm GKB GenePA144596376
Clinical trialSCARNA16
Miscellaneous
canSAR (ICR)SCARNA16 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA16
EVEXSCARNA16
GoPubMedSCARNA16
iHOPSCARNA16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.