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SCARNA17 (small Cajal body-specific RNA 17)

Identity

Alias_symbol (synonym)mgU12-22/U4-8
U91
Other alias
HGNC (Hugo) SCARNA17
LocusID (NCBI) 677769
Atlas_Id 73013
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 49814023 and ends at 49814443 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA17   32574
Cards
Entrez_Gene (NCBI)SCARNA17  677769  small Cajal body-specific RNA 17
AliasesU91
GeneCards (Weizmann)SCARNA17
Ensembl hg19 (Hinxton)ENSG00000267322 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267322 [Gene_View]  chr18:49814023-49814443 [Contig_View]  SCARNA17 [Vega]
ICGC DataPortalENSG00000267322
TCGA cBioPortalSCARNA17
AceView (NCBI)SCARNA17
Genatlas (Paris)SCARNA17
WikiGenes677769
SOURCE (Princeton)SCARNA17
Genetics Home Reference (NIH)SCARNA17
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA17  -     chr18:49814023-49814443 +  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA17  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblSCARNA17 - 18q21.1 [CytoView hg19]  SCARNA17 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBISCARNA17 [Mapview hg19]  SCARNA17 [Mapview hg38]
OMIM615645   
Gene and transcription
Genbank (Entrez)AY077741
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA17
Alternative Splicing GalleryENSG00000267322
Gene ExpressionSCARNA17 [ NCBI-GEO ]   SCARNA17 [ EBI - ARRAY_EXPRESS ]   SCARNA17 [ SEEK ]   SCARNA17 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677769
GTEX Portal (Tissue expression)SCARNA17
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA17
DMDM Disease mutations677769
Blocks (Seattle)SCARNA17
Human Protein AtlasENSG00000267322
Protein Interaction databases
FunCoupENSG00000267322
BioGRIDSCARNA17
STRING (EMBL)SCARNA17
ZODIACSCARNA17
Ontologies - Pathways
Huge Navigator SCARNA17 [HugePedia]
snp3D : Map Gene to Disease677769
BioCentury BCIQSCARNA17
ClinGenSCARNA17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677769
Chemical/Pharm GKB GenePA144596377
Clinical trialSCARNA17
Miscellaneous
canSAR (ICR)SCARNA17 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA17
EVEXSCARNA17
GoPubMedSCARNA17
iHOPSCARNA17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:39:58 CEST 2017

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