Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SCARNA18 (small Cajal body-specific RNA 18)

Identity

Alias_symbol (synonym)U109
SCARNA18A
Other alias
HGNC (Hugo) SCARNA18
LocusID (NCBI) 677765
Atlas_Id 73014
Location 5q14.2  [Link to chromosome band 5q14]
Location_base_pair Starts at 83064204 and ends at 83064337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA18   32559
Cards
Entrez_Gene (NCBI)SCARNA18  677765  small Cajal body-specific RNA 18
AliasesSCARNA18A; U109
GeneCards (Weizmann)SCARNA18
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:83064204-83064337 [Contig_View]  SCARNA18 [Vega]
TCGA cBioPortalSCARNA18
AceView (NCBI)SCARNA18
Genatlas (Paris)SCARNA18
WikiGenes677765
SOURCE (Princeton)SCARNA18
Genetics Home Reference (NIH)SCARNA18
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA18  -     chr5:83064204-83064337 -  5q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA18  -     5q14.2   [Description]    (hg19-Feb_2009)
EnsemblSCARNA18 - 5q14.2 [CytoView hg19]  SCARNA18 - 5q14.2 [CytoView hg38]
Mapping of homologs : NCBISCARNA18 [Mapview hg19]  SCARNA18 [Mapview hg38]
OMIM611329   
Gene and transcription
Genbank (Entrez)AM055742
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA18
Cluster EST : UnigeneHs.693283 [ NCBI ]
CGAP (NCI)Hs.693283
Gene ExpressionSCARNA18 [ NCBI-GEO ]   SCARNA18 [ EBI - ARRAY_EXPRESS ]   SCARNA18 [ SEEK ]   SCARNA18 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677765
GTEX Portal (Tissue expression)SCARNA18
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA18
DMDM Disease mutations677765
Blocks (Seattle)SCARNA18
Protein Interaction databases
BioGRIDSCARNA18
STRING (EMBL)SCARNA18
ZODIACSCARNA18
Ontologies - Pathways
Huge Navigator SCARNA18 [HugePedia]
snp3D : Map Gene to Disease677765
BioCentury BCIQSCARNA18
ClinGenSCARNA18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677765
Chemical/Pharm GKB GenePA144596378
Clinical trialSCARNA18
Miscellaneous
canSAR (ICR)SCARNA18 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA18
EVEXSCARNA18
GoPubMedSCARNA18
iHOPSCARNA18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:12:58 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.