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SCARNA18B (small Cajal body-specific RNA 18B)

Identity

Other alias-
HGNC (Hugo) SCARNA18B
LocusID (NCBI) 107397392
Atlas_Id 78474
Location 1q31.2  [Link to chromosome band 1q31]
Location_base_pair Starts at 193026411 and ends at 193026545 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SCARNA18B   52236
Cards
Entrez_Gene (NCBI)SCARNA18B  107397392  small Cajal body-specific RNA 18B
Aliases
GeneCards (Weizmann)SCARNA18B
Ensembl hg19 (Hinxton)ENSG00000238754 [Gene_View]  chr1:193026411-193026545 [Contig_View]  SCARNA18B [Vega]
Ensembl hg38 (Hinxton)ENSG00000238754 [Gene_View]  chr1:193026411-193026545 [Contig_View]  SCARNA18B [Vega]
ICGC DataPortalENSG00000238754
TCGA cBioPortalSCARNA18B
AceView (NCBI)SCARNA18B
Genatlas (Paris)SCARNA18B
WikiGenes107397392
SOURCE (Princeton)SCARNA18B
Genetics Home Reference (NIH)SCARNA18B
Genomic and cartography
GoldenPath hg19 (UCSC)SCARNA18B  -     chr1:193026411-193026545 -  1q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCARNA18B  -     1q31.2   [Description]    (hg38-Dec_2013)
EnsemblSCARNA18B - 1q31.2 [CytoView hg19]  SCARNA18B - 1q31.2 [CytoView hg38]
Mapping of homologs : NCBISCARNA18B [Mapview hg19]  SCARNA18B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA18B
Alternative Splicing GalleryENSG00000238754
Gene ExpressionSCARNA18B [ NCBI-GEO ]   SCARNA18B [ EBI - ARRAY_EXPRESS ]   SCARNA18B [ SEEK ]   SCARNA18B [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA18B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)107397392
GTEX Portal (Tissue expression)SCARNA18B
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA18B
DMDM Disease mutations107397392
Blocks (Seattle)SCARNA18B
Human Protein AtlasENSG00000238754
Protein Interaction databases
FunCoupENSG00000238754
BioGRIDSCARNA18B
STRING (EMBL)SCARNA18B
ZODIACSCARNA18B
Ontologies - Pathways
Huge Navigator SCARNA18B [HugePedia]
snp3D : Map Gene to Disease107397392
BioCentury BCIQSCARNA18B
ClinGenSCARNA18B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107397392
Clinical trialSCARNA18B
Miscellaneous
canSAR (ICR)SCARNA18B (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA18B
EVEXSCARNA18B
GoPubMedSCARNA18B
iHOPSCARNA18B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:25 CET 2017

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