Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCARNA2 (small Cajal body-specific RNA 2)

Identity

Alias_symbol (synonym)mgU2-25/61
HBII-382
Other alias
HGNC (Hugo) SCARNA2
LocusID (NCBI) 677766
Atlas_Id 73015
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 109100193 and ends at 109100612 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FSTL3 (19p13.3) / SCARNA2 (1p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA2   32558
Cards
Entrez_Gene (NCBI)SCARNA2  677766  small Cajal body-specific RNA 2
AliasesHBII-382; mgU2-25/61
GeneCards (Weizmann)SCARNA2
Ensembl hg19 (Hinxton)ENSG00000270066 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270066 [Gene_View]  chr1:109100193-109100612 [Contig_View]  SCARNA2 [Vega]
ICGC DataPortalENSG00000270066
TCGA cBioPortalSCARNA2
AceView (NCBI)SCARNA2
Genatlas (Paris)SCARNA2
WikiGenes677766
SOURCE (Princeton)SCARNA2
Genetics Home Reference (NIH)SCARNA2
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA2  -     chr1:109100193-109100612 +  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA2  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblSCARNA2 - 1p13.3 [CytoView hg19]  SCARNA2 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBISCARNA2 [Mapview hg19]  SCARNA2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC071822
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA2
Cluster EST : UnigeneHs.550815 [ NCBI ]
CGAP (NCI)Hs.550815
Alternative Splicing GalleryENSG00000270066
Gene ExpressionSCARNA2 [ NCBI-GEO ]   SCARNA2 [ EBI - ARRAY_EXPRESS ]   SCARNA2 [ SEEK ]   SCARNA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677766
GTEX Portal (Tissue expression)SCARNA2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA2
DMDM Disease mutations677766
Blocks (Seattle)SCARNA2
Human Protein AtlasENSG00000270066
Protein Interaction databases
FunCoupENSG00000270066
BioGRIDSCARNA2
STRING (EMBL)SCARNA2
ZODIACSCARNA2
Ontologies - Pathways
Huge Navigator SCARNA2 [HugePedia]
snp3D : Map Gene to Disease677766
BioCentury BCIQSCARNA2
ClinGenSCARNA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677766
Chemical/Pharm GKB GenePA144596384
Clinical trialSCARNA2
Miscellaneous
canSAR (ICR)SCARNA2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA2
EVEXSCARNA2
GoPubMedSCARNA2
iHOPSCARNA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:39:59 CEST 2017

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