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SCARNA21B (small Cajal body-specific RNA 21B)

Identity

Other alias-
HGNC (Hugo) SCARNA21B
LocusID (NCBI) 107397391
Atlas_Id 79096
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 15542166 and ends at 15542304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SCARNA21B   52237
Cards
Entrez_Gene (NCBI)SCARNA21B  107397391  small Cajal body-specific RNA 21B
Aliases
GeneCards (Weizmann)SCARNA21B
Ensembl hg19 (Hinxton)ENSG00000251866 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251866 [Gene_View]  chr1:15542166-15542304 [Contig_View]  SCARNA21B [Vega]
ICGC DataPortalENSG00000251866
TCGA cBioPortalSCARNA21B
AceView (NCBI)SCARNA21B
Genatlas (Paris)SCARNA21B
WikiGenes107397391
SOURCE (Princeton)SCARNA21B
Genetics Home Reference (NIH)SCARNA21B
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA21B  -     chr1:15542166-15542304 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA21B  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblSCARNA21B - 1p36.21 [CytoView hg19]  SCARNA21B - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBISCARNA21B [Mapview hg19]  SCARNA21B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA21B
Alternative Splicing GalleryENSG00000251866
Gene ExpressionSCARNA21B [ NCBI-GEO ]   SCARNA21B [ EBI - ARRAY_EXPRESS ]   SCARNA21B [ SEEK ]   SCARNA21B [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA21B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)107397391
GTEX Portal (Tissue expression)SCARNA21B
Human Protein AtlasENSG00000251866-SCARNA21B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA21B
DMDM Disease mutations107397391
Blocks (Seattle)SCARNA21B
Human Protein Atlas [tissue]ENSG00000251866-SCARNA21B [tissue]
Protein Interaction databases
FunCoupENSG00000251866
BioGRIDSCARNA21B
STRING (EMBL)SCARNA21B
ZODIACSCARNA21B
Ontologies - Pathways
Huge Navigator SCARNA21B [HugePedia]
snp3D : Map Gene to Disease107397391
BioCentury BCIQSCARNA21B
ClinGenSCARNA21B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD107397391
Clinical trialSCARNA21B
Miscellaneous
canSAR (ICR)SCARNA21B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA21B
EVEXSCARNA21B
GoPubMedSCARNA21B
iHOPSCARNA21B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:11:18 CET 2017

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