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SCARNA22 (small Cajal body-specific RNA 22)

Identity

Alias_symbol (synonym)ACA11
Other alias
HGNC (Hugo) SCARNA22
LocusID (NCBI) 677770
Atlas_Id 73018
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 1974636 and ends at 1974760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA22   32580
Cards
Entrez_Gene (NCBI)SCARNA22  677770  small Cajal body-specific RNA 22
AliasesACA11
GeneCards (Weizmann)SCARNA22
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:1974636-1974760 [Contig_View]  SCARNA22 [Vega]
TCGA cBioPortalSCARNA22
AceView (NCBI)SCARNA22
Genatlas (Paris)SCARNA22
WikiGenes677770
SOURCE (Princeton)SCARNA22
Genetics Home Reference (NIH)SCARNA22
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA22  -     chr4:1974636-1974760 +  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA22  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblSCARNA22 - 4p16.3 [CytoView hg19]  SCARNA22 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBISCARNA22 [Mapview hg19]  SCARNA22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609470
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA22
Cluster EST : UnigeneHs.676951 [ NCBI ]
CGAP (NCI)Hs.676951
Gene ExpressionSCARNA22 [ NCBI-GEO ]   SCARNA22 [ EBI - ARRAY_EXPRESS ]   SCARNA22 [ SEEK ]   SCARNA22 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677770
GTEX Portal (Tissue expression)SCARNA22
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA22
DMDM Disease mutations677770
Blocks (Seattle)SCARNA22
Protein Interaction databases
BioGRIDSCARNA22
STRING (EMBL)SCARNA22
ZODIACSCARNA22
Ontologies - Pathways
Huge Navigator SCARNA22 [HugePedia]
snp3D : Map Gene to Disease677770
BioCentury BCIQSCARNA22
ClinGenSCARNA22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677770
Chemical/Pharm GKB GenePA144596381
Clinical trialSCARNA22
Miscellaneous
canSAR (ICR)SCARNA22 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA22
EVEXSCARNA22
GoPubMedSCARNA22
iHOPSCARNA22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:10:50 CET 2017

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