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SCARNA27 (small Cajal body-specific RNA 27)

Identity

Other alias-
HGNC (Hugo) SCARNA27
LocusID (NCBI) 100124533
Atlas_Id 73020
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 8086408 and ends at 8086533 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA27   33614
Cards
Entrez_Gene (NCBI)SCARNA27  100124533  small Cajal body-specific RNA 27
Aliases
GeneCards (Weizmann)SCARNA27
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:8086408-8086533 [Contig_View]  SCARNA27 [Vega]
TCGA cBioPortalSCARNA27
AceView (NCBI)SCARNA27
Genatlas (Paris)SCARNA27
WikiGenes100124533
SOURCE (Princeton)SCARNA27
Genetics Home Reference (NIH)SCARNA27
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA27  -     chr6:8086408-8086533 -  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA27  -     6p24.3   [Description]    (hg19-Feb_2009)
EnsemblSCARNA27 - 6p24.3 [CytoView hg19]  SCARNA27 - 6p24.3 [CytoView hg38]
Mapping of homologs : NCBISCARNA27 [Mapview hg19]  SCARNA27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA27
Gene ExpressionSCARNA27 [ NCBI-GEO ]   SCARNA27 [ EBI - ARRAY_EXPRESS ]   SCARNA27 [ SEEK ]   SCARNA27 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100124533
GTEX Portal (Tissue expression)SCARNA27
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA27
DMDM Disease mutations100124533
Blocks (Seattle)SCARNA27
Protein Interaction databases
BioGRIDSCARNA27
STRING (EMBL)SCARNA27
ZODIACSCARNA27
Ontologies - Pathways
Huge Navigator SCARNA27 [HugePedia]
snp3D : Map Gene to Disease100124533
BioCentury BCIQSCARNA27
ClinGenSCARNA27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100124533
Chemical/Pharm GKB GenePA162402513
Clinical trialSCARNA27
Miscellaneous
canSAR (ICR)SCARNA27 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA27
EVEXSCARNA27
GoPubMedSCARNA27
iHOPSCARNA27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:28:13 CEST 2018

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