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SCARNA3 (small Cajal body-specific RNA 3)

Identity

Alias_symbol (synonym)HBI-100
Other alias
HGNC (Hugo) SCARNA3
LocusID (NCBI) 677679
Atlas_Id 73021
Location 1q25.1  [Link to chromosome band 1q25]
Location_base_pair Starts at 175937533 and ends at 175937676 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA3   32577
Cards
Entrez_Gene (NCBI)SCARNA3  677679  small Cajal body-specific RNA 3
AliasesHBI-100
GeneCards (Weizmann)SCARNA3
Ensembl hg19 (Hinxton) [Gene_View]  chr1:175937533-175937676 [Contig_View]  SCARNA3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:175937533-175937676 [Contig_View]  SCARNA3 [Vega]
TCGA cBioPortalSCARNA3
AceView (NCBI)SCARNA3
Genatlas (Paris)SCARNA3
WikiGenes677679
SOURCE (Princeton)SCARNA3
Genetics Home Reference (NIH)SCARNA3
Genomic and cartography
GoldenPath hg19 (UCSC)SCARNA3  -     chr1:175937533-175937676 -  1q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SCARNA3  -     1q25.1   [Description]    (hg38-Dec_2013)
EnsemblSCARNA3 - 1q25.1 [CytoView hg19]  SCARNA3 - 1q25.1 [CytoView hg38]
Mapping of homologs : NCBISCARNA3 [Mapview hg19]  SCARNA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SCARNA3
Gene ExpressionSCARNA3 [ NCBI-GEO ]   SCARNA3 [ EBI - ARRAY_EXPRESS ]   SCARNA3 [ SEEK ]   SCARNA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677679
GTEX Portal (Tissue expression)SCARNA3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA3
DMDM Disease mutations677679
Blocks (Seattle)SCARNA3
Protein Interaction databases
BioGRIDSCARNA3
STRING (EMBL)SCARNA3
ZODIACSCARNA3
Ontologies - Pathways
Huge Navigator SCARNA3 [HugePedia]
snp3D : Map Gene to Disease677679
BioCentury BCIQSCARNA3
ClinGenSCARNA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677679
Chemical/Pharm GKB GenePA144596363
Clinical trialSCARNA3
Miscellaneous
canSAR (ICR)SCARNA3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA3
EVEXSCARNA3
GoPubMedSCARNA3
iHOPSCARNA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:42:27 CET 2017

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