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SCARNA4 (small Cajal body-specific RNA 4)

Identity

Alias (NCBI)ACA26
HGNC (Hugo) SCARNA4
HGNC Alias symbACA26
LocusID (NCBI) 677771
Atlas_Id 73022
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155925958 and ends at 155926086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SCARNA4   32560
Cards
Entrez_Gene (NCBI)SCARNA4    small Cajal body-specific RNA 4
AliasesACA26
GeneCards (Weizmann)SCARNA4
Ensembl hg19 (Hinxton)ENSG00000281394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281394 [Gene_View]  ENSG00000281394 [Sequence]  chr1:155925958-155926086 [Contig_View]  SCARNA4 [Vega]
ICGC DataPortalENSG00000281394
TCGA cBioPortalSCARNA4
AceView (NCBI)SCARNA4
Genatlas (Paris)SCARNA4
SOURCE (Princeton)SCARNA4
Genetics Home Reference (NIH)SCARNA4
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA4  -     chr1:155925958-155926086 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA4  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathSCARNA4 - 1q22 [CytoView hg19]  SCARNA4 - 1q22 [CytoView hg38]
ImmunoBaseENSG00000281394
Genome Data Viewer NCBISCARNA4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ609483
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA4
Gene ExpressionSCARNA4 [ NCBI-GEO ]   SCARNA4 [ EBI - ARRAY_EXPRESS ]   SCARNA4 [ SEEK ]   SCARNA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA4 [ Firebrowse - Broad ]
GenevisibleExpression of SCARNA4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)677771
GTEX Portal (Tissue expression)SCARNA4
Human Protein AtlasENSG00000281394-SCARNA4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA4
Human Protein Atlas [tissue]ENSG00000281394-SCARNA4 [tissue]
Protein Interaction databases
BioGRIDSCARNA4
STRING (EMBL)SCARNA4
ZODIACSCARNA4
Ontologies - Pathways
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSCARNA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:19:56 CEST 2021

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