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SCARNA4 (small Cajal body-specific RNA 4)

Identity

Alias_symbol (synonym)ACA26
Other alias
HGNC (Hugo) SCARNA4
LocusID (NCBI) 677771
Atlas_Id 73022
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155925958 and ends at 155926086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA4   32560
Cards
Entrez_Gene (NCBI)SCARNA4  677771  small Cajal body-specific RNA 4
AliasesACA26
GeneCards (Weizmann)SCARNA4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:155925958-155926086 [Contig_View]  SCARNA4 [Vega]
TCGA cBioPortalSCARNA4
AceView (NCBI)SCARNA4
Genatlas (Paris)SCARNA4
WikiGenes677771
SOURCE (Princeton)SCARNA4
Genetics Home Reference (NIH)SCARNA4
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA4  -     chr1:155925958-155926086 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA4  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblSCARNA4 - 1q22 [CytoView hg19]  SCARNA4 - 1q22 [CytoView hg38]
Mapping of homologs : NCBISCARNA4 [Mapview hg19]  SCARNA4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609483
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA4
Cluster EST : UnigeneHs.678903 [ NCBI ]
CGAP (NCI)Hs.678903
Gene ExpressionSCARNA4 [ NCBI-GEO ]   SCARNA4 [ EBI - ARRAY_EXPRESS ]   SCARNA4 [ SEEK ]   SCARNA4 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677771
GTEX Portal (Tissue expression)SCARNA4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA4
DMDM Disease mutations677771
Blocks (Seattle)SCARNA4
Protein Interaction databases
BioGRIDSCARNA4
STRING (EMBL)SCARNA4
ZODIACSCARNA4
Ontologies - Pathways
Huge Navigator SCARNA4 [HugePedia]
snp3D : Map Gene to Disease677771
BioCentury BCIQSCARNA4
ClinGenSCARNA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677771
Chemical/Pharm GKB GenePA144596364
Clinical trialSCARNA4
Miscellaneous
canSAR (ICR)SCARNA4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA4
EVEXSCARNA4
GoPubMedSCARNA4
iHOPSCARNA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:26:27 CET 2017

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