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SCARNA5 (small Cajal body-specific RNA 5)

Identity

Alias_symbol (synonym)U87
Other alias
HGNC (Hugo) SCARNA5
LocusID (NCBI) 677775
Atlas_Id 73023
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 233275726 and ends at 233276003 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCARNA5   32561
Cards
Entrez_Gene (NCBI)SCARNA5  677775  small Cajal body-specific RNA 5
AliasesU87
GeneCards (Weizmann)SCARNA5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:233275726-233276003 [Contig_View]  SCARNA5 [Vega]
TCGA cBioPortalSCARNA5
AceView (NCBI)SCARNA5
Genatlas (Paris)SCARNA5
WikiGenes677775
SOURCE (Princeton)SCARNA5
Genetics Home Reference (NIH)SCARNA5
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA5  -     chr2:233275726-233276003 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA5  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblSCARNA5 - 2q37.1 [CytoView hg19]  SCARNA5 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBISCARNA5 [Mapview hg19]  SCARNA5 [Mapview hg38]
OMIM615640   
Gene and transcription
Genbank (Entrez)AY077737
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA5
Cluster EST : UnigeneHs.663619 [ NCBI ]
CGAP (NCI)Hs.663619
Gene ExpressionSCARNA5 [ NCBI-GEO ]   SCARNA5 [ EBI - ARRAY_EXPRESS ]   SCARNA5 [ SEEK ]   SCARNA5 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677775
GTEX Portal (Tissue expression)SCARNA5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA5
DMDM Disease mutations677775
Blocks (Seattle)SCARNA5
Protein Interaction databases
BioGRIDSCARNA5
STRING (EMBL)SCARNA5
ZODIACSCARNA5
Ontologies - Pathways
Huge Navigator SCARNA5 [HugePedia]
snp3D : Map Gene to Disease677775
BioCentury BCIQSCARNA5
ClinGenSCARNA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677775
Chemical/Pharm GKB GenePA144596365
Clinical trialSCARNA5
Miscellaneous
canSAR (ICR)SCARNA5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA5
EVEXSCARNA5
GoPubMedSCARNA5
iHOPSCARNA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:02 CEST 2017
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