Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SCARNA5 (small Cajal body-specific RNA 5)

Identity

Alias (NCBI)U87
HGNC (Hugo) SCARNA5
HGNC Alias symbU87
LocusID (NCBI) 677775
Atlas_Id 73023
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 233275726 and ends at 233276003 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA5   32561
Cards
Entrez_Gene (NCBI)SCARNA5  677775  small Cajal body-specific RNA 5
AliasesU87
GeneCards (Weizmann)SCARNA5
Ensembl hg19 (Hinxton)ENSG00000252010 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000252010 [Gene_View]  ENSG00000252010 [Sequence]  chr2:233275726-233276003 [Contig_View]  SCARNA5 [Vega]
ICGC DataPortalENSG00000252010
TCGA cBioPortalSCARNA5
AceView (NCBI)SCARNA5
Genatlas (Paris)SCARNA5
WikiGenes677775
SOURCE (Princeton)SCARNA5
Genetics Home Reference (NIH)SCARNA5
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA5  -     chr2:233275726-233276003 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA5  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathSCARNA5 - 2q37.1 [CytoView hg19]  SCARNA5 - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000252010
genome Data Viewer NCBISCARNA5 [Mapview hg19]  
OMIM615640   
Gene and transcription
Genbank (Entrez)AY077737
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA5
Alternative Splicing GalleryENSG00000252010
Gene ExpressionSCARNA5 [ NCBI-GEO ]   SCARNA5 [ EBI - ARRAY_EXPRESS ]   SCARNA5 [ SEEK ]   SCARNA5 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA5 [ Firebrowse - Broad ]
GenevisibleExpression of SCARNA5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)677775
GTEX Portal (Tissue expression)SCARNA5
Human Protein AtlasENSG00000252010-SCARNA5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA5
DMDM Disease mutations677775
Blocks (Seattle)SCARNA5
Human Protein Atlas [tissue]ENSG00000252010-SCARNA5 [tissue]
Protein Interaction databases
FunCoupENSG00000252010
BioGRIDSCARNA5
STRING (EMBL)SCARNA5
ZODIACSCARNA5
Ontologies - Pathways
Huge Navigator SCARNA5 [HugePedia]
snp3D : Map Gene to Disease677775
BioCentury BCIQSCARNA5
ClinGenSCARNA5
Clinical trials, drugs, therapy
Protein Interactions : CTD677775
Pharm GKB GenePA144596365
Clinical trialSCARNA5
Miscellaneous
canSAR (ICR)SCARNA5 (select the gene name)
HarmonizomeSCARNA5
DataMed IndexSCARNA5
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA5
EVEXSCARNA5
GoPubMedSCARNA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:26:57 CEST 2020

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