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SCARNA6 (small Cajal body-specific RNA 6)

Identity

Alias_symbol (synonym)U88
Other alias
HGNC (Hugo) SCARNA6
LocusID (NCBI) 677772
Atlas_Id 73024
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 233288676 and ends at 233288941 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SCARNA6   32562
Cards
Entrez_Gene (NCBI)SCARNA6  677772  small Cajal body-specific RNA 6
AliasesU88
GeneCards (Weizmann)SCARNA6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:233288676-233288941 [Contig_View]  SCARNA6 [Vega]
TCGA cBioPortalSCARNA6
AceView (NCBI)SCARNA6
Genatlas (Paris)SCARNA6
WikiGenes677772
SOURCE (Princeton)SCARNA6
Genetics Home Reference (NIH)SCARNA6
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA6  -     chr2:233288676-233288941 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA6  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblSCARNA6 - 2q37.1 [CytoView hg19]  SCARNA6 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBISCARNA6 [Mapview hg19]  SCARNA6 [Mapview hg38]
OMIM615641   
Gene and transcription
Genbank (Entrez)AY077738
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA6
Cluster EST : UnigeneHs.689637 [ NCBI ]
CGAP (NCI)Hs.689637
Gene ExpressionSCARNA6 [ NCBI-GEO ]   SCARNA6 [ EBI - ARRAY_EXPRESS ]   SCARNA6 [ SEEK ]   SCARNA6 [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677772
GTEX Portal (Tissue expression)SCARNA6
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA6
DMDM Disease mutations677772
Blocks (Seattle)SCARNA6
Protein Interaction databases
BioGRIDSCARNA6
STRING (EMBL)SCARNA6
ZODIACSCARNA6
Ontologies - Pathways
Huge Navigator SCARNA6 [HugePedia]
snp3D : Map Gene to Disease677772
BioCentury BCIQSCARNA6
ClinGenSCARNA6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677772
Chemical/Pharm GKB GenePA144596366
Clinical trialSCARNA6
Miscellaneous
canSAR (ICR)SCARNA6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA6
EVEXSCARNA6
GoPubMedSCARNA6
iHOPSCARNA6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:40:02 CEST 2017

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