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SCARNA9L (small Cajal body-specific RNA 9 like)

Identity

Alias (NCBI)-
HGNC (Hugo) SCARNA9L
HGNC Previous namesmall Cajal body-specific RNA 9-like (retrotransposed)
LocusID (NCBI) 100158262
Atlas_Id 73028
Location Xp22.12  [Link to chromosome band Xp22]
Location_base_pair Starts at 20136066 and ends at 20136413 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SCARNA9L   33559
Cards
Entrez_Gene (NCBI)SCARNA9L    small Cajal body-specific RNA 9 like
Aliases
GeneCards (Weizmann)SCARNA9L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chrX:20136066-20136413 [Contig_View]  SCARNA9L [Vega]
TCGA cBioPortalSCARNA9L
AceView (NCBI)SCARNA9L
Genatlas (Paris)SCARNA9L
SOURCE (Princeton)SCARNA9L
Genetics Home Reference (NIH)SCARNA9L
Genomic and cartography
GoldenPath hg38 (UCSC)SCARNA9L  -     chrX:20136066-20136413 -  Xp22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SCARNA9L  -     Xp22.12   [Description]    (hg19-Feb_2009)
GoldenPathSCARNA9L - Xp22.12 [CytoView hg19]  SCARNA9L - Xp22.12 [CytoView hg38]
genome Data Viewer NCBISCARNA9L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SCARNA9L
Gene ExpressionSCARNA9L [ NCBI-GEO ]   SCARNA9L [ EBI - ARRAY_EXPRESS ]   SCARNA9L [ SEEK ]   SCARNA9L [ MEM ]
Gene Expression Viewer (FireBrowse)SCARNA9L [ Firebrowse - Broad ]
GenevisibleExpression of SCARNA9L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100158262
GTEX Portal (Tissue expression)SCARNA9L
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SCARNA9L
Blocks (Seattle)SCARNA9L
Protein Interaction databases
BioGRIDSCARNA9L
STRING (EMBL)SCARNA9L
ZODIACSCARNA9L
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSCARNA9L
EVEXSCARNA9L
GoPubMedSCARNA9L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:26:12 CET 2020
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